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current user: public |
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Query: [J] KOG0900 40S ribosomal protein S20, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 | |||||||
# | Score | Template | Links and tools | %id | First | MAFKDTGKTPVEPEVCADLIRGAKEKNLKVKGPVRMLTKTLRITTRKTPCGEGSKTWDRFQMRIHQRLIDLHSPSEIVKQITSISIEPGVEVEVTIAGCLSQQF | Last |
1 | -73.000 | [J] KOG0900 40S ribosomal protein S20 | ali | 100 | 1 | MAFKDTGKTPVEPEVCADLIRGAKEKNLKVKGPVRMLTKTLRITTRKTPCGEGSKTWDRFQMRIHQRLIDLHSPSEIVKQITSISIEPGVEVEVTIAGCLSQQF | 104 |
2 | -49.400 | [J] COG0051 Ribosomal protein S10 | ali follow.. | 20 | 6 | IRIRLAYDHRVLDQSAEKIVETAKRSGANVSGPIPLPTEKSVYTILRAVH-KYKDSREQFEMRTHKRLIDIVNTPQTVDALMRLDLPSGVDIEIKL........ | 102 |
3 | -46.000 | [J] KOG3321 Mitochondrial ribosomal protein S10 | ali follow.. | 15 | 43 | ADIQLSYDNENLDFYSDFILRTGYYLGIPLTGPKPLPTRRERWTVIKSPF-VHAKSKENFERHTHKRLIRAWDTNQMLIAYITKHSMAGVGMKCNFFQRSEISL | 150 |
4 | -37.800 | [S] KOG4060 Uncharacterized conserved protein | ali follow.. | 19 | 95 | LNIHLAYDMTLAESYAQYVHNFCNSLSIKVEESYVMPTKTTEVLWLQDQ---GSKTFLDSVLTTHERVVHISSLSEIFLEIIQSSLPEGVRLSLKEHTEEDFK. | 199 |
5 | -6.640 | [S] COG2880 Uncharacterized protein conserved in archaea | ali follow.. | 11 | 3 | ..................................................................KIIEAIYENGVFKPLQKVDLKEGERVRIKLEKVEE... | 37 |
6 | -5.330 | [J] KOG3499 60S ribosomal protein L38 | ali follow.. | 17 | 28 | ....................................................NTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVT........... | 68 |
7 | -5.240 | [S] KOG4147 Uncharacterized conserved protein | ali follow.. | 8 | 10 | VRLIRSFEHRNLDQTVKEFIVFLKQ-DIPLRTNLPPPFRNYKYDALKIIHQAHKS-------KTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDY | 115 |
8 | -4.770 | [P] COG2837 Predicted iron-dependent peroxidase | ali follow.. | 8 | 272 | VR-LIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHD------VPDYASDPEGKVIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLF | 368 |
9 | -4.370 | [G] KOG2772 Transaldolase | ali follow.. | 14 | 77 | ..................FVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEKEGISKLIKLASTWEGIRAAKFLESKHGIHCNMTLLFNFEQA. | 164 |
10 | -4.240 | [S] KOG3267 Uncharacterized conserved protein | ali follow.. | 12 | 166 | LNVQETLRDGVDIDDVDEDVDEDEDLDLDLETVTTVPLNNEQLNA-KVTTTTSSSSAASSALAKFNRIIDVAVDYSGLPQLSSATLQQRFNLELVNQQQQQQQ. | 277 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |