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Query: [Z] KOG0980 Actin-binding protein SLA2/Huntingtin-interacting protein Hip1, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDHRAQAREVFVRAQLEAVQKAITKNEVPLKPKHARTIIVGTHKEKSSGIFWHTVGRIQLEKHPVLTWKFCHLVHKLLRDGHRKVPEETYRYVNRFTQLSQFWKHLNTSGYGPCIESYCKLLHDRVTFHNKYPVVPGKLDLNDSQLKTLEGDLDNMFEMTIDMLDQMDALLVLQDRVYEMMNSLRWNSLIPQGQCMLSPLIIAILDTSKFYDYLVKMIFKLHSQVPPDALEGHRSRFRTIFERTKKFYEESSNLQYFKYLVSIPTLPSHAPNFLQQSDLESYRTPHAYLHSEGSEDGTSLNGHDGELLNLAEAEPQQASPSSQPDPREEQIVMLSRAVEDEKFAKERLIQEARSRIEQYENRLLQMQGEFDHAKREADENREEAQRLKNELALRDASRTQTDDARVKEAELKATAAEERFNKMKGVYEKFRSEHVLALTKLGDIQKQLEASEKSKFDKDEEITALNRKVEEAQREAGRALTKAEGDAGAVDEMRTQLVKADIEVEELKRTIDHLRESHANQLVQSSAEETNKIRLAELEVAKESGVGITQMFDHCEDALQNATSITYPPHLAQSAMNNLVNILSNERLDEPLATKDNVFAGHLLSTTLSAAASAAYTASIESYEGVNDQCKKVLAAAKVAFSDDSALSRADKMKLLRQDIQTLNSLMISLPLQTDIDKDVVGNELEQEMRRMDDAIRRAVQEIEAIQRRARESSDGIRLEVNESILANCQALMSVIMQLVIASRELQTEIVAAGKAGGSPAEFYKRNHQWTEGLLSAAKAVGVAARVLVESADGVVTGKGKFEHLIVAAQEIAASTAQLFVSSRVKADKDSSKLDALSVAAKAVNQNTAQVVAAVKNGQTTLNDEGSLDFSYLSLHAAKKEEMESQVKMLELEQSLNQERAKLAALRKQHYHMAQLVANKSLast
1 -212.000[Z] KOG0980 Actin-binding protein SLA2/Huntingtin-interacting protein Hip1  ali  100  1MDHRAQAREVFVRAQLEAVQKAITKNEVPLKPKHARTIIVGTHKEKSSGIFWHTVGRIQLEKHPVLTWKFCHLVHKLLRDGHRKVPEETYRYVNRFTQLSQFWKHLNTSGYGPCIESYCKLLHDRVTFHNKYPVVPGKLDLNDSQLKTLEGDLDNMFEMTIDMLDQMDALLVLQDRVYEMMNSLRWNSLIPQGQCMLSPLIIAILDTSKFYDYLVKMIFKLHSQVPPDALEGHRSRFRTIFERTKKFYEESSNLQYFKYLVSIPTLPSHAPNFLQQSDLESYRTPHAYLHSEGSEDGTSLNGHDGELLNLAEAEPQQASPSSQPDPREEQIVMLSRAVEDEKFAKERLIQEARSRIEQYENRLLQMQGEFDHAKREADENREEAQRLKNELALRDASRTQTDDARVKEAELKATAAEERFNKMKGVYEKFRSEHVLALTKLGDIQKQLEASEKSKFDKDEEITALNRKVEEAQREAGRALTKAEGDAGAVDEMRTQLVKADIEVEELKRTIDHLRESHANQLVQSSAEETNKIRLAELEVAKESGVGITQMFDHCEDALQNATSITYPPHLAQSAMNNLVNILSNERLDEPLATKDNVFAGHLLSTTLSAAASAAYTASIESYEGVNDQCKKVLAAAKVAFSDDSALSRADKMKLLRQDIQTLNSLMISLPLQTDIDKDVVGNELEQEMRRMDDAIRRAVQEIEAIQRRARESSDGIRLEVNESILANCQALMSVIMQLVIASRELQTEIVAAGKAGGSPAEFYKRNHQWTEGLLSAAKAVGVAARVLVESADGVVTGKGKFEHLIVAAQEIAASTAQLFVSSRVKADKDSSKLDALSVAAKAVNQNTAQVVAAVKNGQTTLNDEGSLDFSYLSLHAAKKEEMESQVKMLELEQSLNQERAKLAALRKQHYHMAQLVANKS 921
2 -39.100[TU] KOG0251 Clathrin assembly protein AP180 and related proteins, contain ENTH domain  ali follow..  15  1MGTLQSWRNSEYADLDVAIVKATNHVECPPKDRHLRKIFAATSVTRAAYCIHALSRRLHKTRNWTVALKTLIVIHRLLREGDPTFREELFSQRGRILQLSNF-SSPIAWDCSAWVRTYALFLEERLECFRVLKYD---TEAERLPKSNPGQDKGYSRTRDLDGEELLEQLPALQQLLYRLIGCRPEGAAN-HNHVIQYALALVLKESFKVYCNLIDKFFEMAKHEAITSLEIYK-RAGQQARSLSDFYEACKGLELARN-FQFPVLREPPQSFLTTMEEYIKEAPRVVDVPAEPLLLTYRPDDGLTTEDTEPSHEEREMLPSDDVVVVSEETEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 395
3 -16.800[U] KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport  ali follow..  11  169..................................................................................................................................................................................................................................RKDVEVKESKLSSSMNSIKTFWS--------------PELKKE------RKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLR---EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL--QADTTNTDTALTTLEEALAEKERTIERLKEQRDR-DEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALARASPEMSDRIQHLEREITRYKDESSKAQAEV----------DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKH---KEQVEKKKSAQMLEEARRREDNLNELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLR-MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT 908
4 -13.100[S] COG5283 Phage-related tail protein  ali follow..  2.............................................................................................................................................................................................................................................................................................................................................ADIMVDSVTTGIDLNETKAVEAINRLKSAVKDSTREWQINEAQAKSAGDAVSASK---------------YRYEGLSEAMEKQKAYIANLSEGMKTINRNTDAGEKAYQKYNAQLTTAERSLASMTGQLNRAKSAYEYQQTGIEDLNKSLSANDKLMQSQIDLYEKTRNKMGAAKAEVSGLSTSYAKQTEIYRAQVTE-------KRLEAAEGTSSETLVKQKTRVNEAASS---------------------------LMNYRNKLLEANLAVTKMQPFNSESLIGKGLNTVYQTTEKATDVMAAGYQKVKS------AYQSAFGIAAIGAAAVKGAQMASELQNQYKT-TFNLLVTGGEQAKEAQENVNKMQEQGSELSVKYGKTQKE----TSSQALAALPTMLQASVASGDDFTDVVHNSTAALESFGMRSNDVAGMTKNTKEAVNQMAYAADMTATDFQNMGAMEYVGASAHQSKLSLSETASAIGILSNNGLEA----DKAGTGLRKVIVSLQSPSKDAAEA--------LSGIGLSTKDFVDQNGNMKSMEIFGLLNQHTEKLSSFQKGQ........... 523
5 -11.200[NT] COG0840 Methyl-accepting chemotaxis protein  ali follow..  124...................................................................................................................................................................................................................................................................................................................................................................................................................DGLRKNADSILASEQTVLSLHQVASTLAETIPQLQVEYEEVVDILLENGAPADQVAVAQRQSLERILGSVNKVLAGDENSVQAADSFGRDASLFGRVLKGMQEGNAAMSISKVTNAEAVDRLNEIAE------LFEFVSGSVDEILETSPDLFQVREAANNIFSVSQTLLDKASQLADGFENLAGGRSINLFAGYALGALALASIILIGLVMVRETNRRLAETAEKNDRNQAAILRLLDEIADLADGDLTVAATVTEDFTGAIADSI------------NYSIDQLRELVETINQTAVQVAAAAQETQSTAMHLA-EASEHQAQEIAGASAAINEMAVSIDQVSANASESSAVAERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIGDIVSLINDIADQTNILVVADEVQAERSSAATKQIEALVKTIQTDTNEAVISMEQTTSEVVRARLAQDAGVALEEIEKVSKTLAALIQNISNAARQQASSAGHISNTMNVIQEITSQTS 646
6 -10.700[S] COG5280 Phage-related minor tail protein  ali follow..  10  3....................................................................................................................................................................................................................................................................................................................................................................................................................................KKISGITIAIGADTTGVTNGLKDIGKQSNSVNSELRDVERLLKLNPNNVELVAQKQQLLSKQVELTTKKLDGLKGAQADVDRQFKSGDIGEEQYRAFQRE--------------------VVATEGRLDHYKQSLKDVESSSGEAGNATKGLGGKFDELGQSVEDVG---EAVKGGVLMEAADHLSVVGDKLKEFSGSAQEAFSDVDEGMDKITTTTGKASDEFKTQFDNIISSMAVDSFEDVGSALGTLSAQFDMSGDTLEKNSKLALQYANTDVKTSIESAKSAIEAYGLSNKDFS-TVLDSVTATSQRTGVAVDSLFDSAVKGAPQIKDLG----NFSQGTELLGQFSKAGVDGDAALSSLSKASIIYAKGNKSLSEGLGETIEKIKNAKTKQEALTEAATV----GTKGASRMVDAIQRGAFNLSELGDVAKKSNGTISDTFNKTVDDIDEQQIASQQAKVAMSEFAIATGLKPLLDLLVPL............... 463
7 -10.700[D] COG3096 Uncharacterized protein involved in chromosome partitioning  ali follow..  10  223...................................................................................................................................................................................................................................................................................................................................................PENSGVRKAFQDMEAALRENRMTLEAIR-VTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLN-LVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQQENEARAEAAELEVDELKSQLADYQQALDVQ---QTRAIQYNQAIAALNRAKELCHLPDLTADCAAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQPLRMRLSEEQRLREQQEAERLLADFCKRQGKNFDIDEL--EALHQELEARIASLSDSVSNAREERMAL--RQEQEQLQSRIQSLMQRAPVWLAAQNSLNQL---SEQCGEEFTSSQDVTEYLQQLLERERE----AIVERDEVGARKNAVDEEIERLSQPGGSEQRLNALAERFGG---VLLSAPYFSA-RHAIVVPDLSQVTEHLEGLTDCLIESFDDSVFSVDELEKAVVVKIADRQWRYSRFESRIESLHAEREIRQLNSRRVELERALSNHENDNQQ.. 861
8 -10.400[S] COG1511 Predicted membrane protein  ali follow..  71..................................................................................................................................................................................................................................................................................................................................................................................................................DDLVKELKDNNNFDWHFSNDLDQSLKDLLNKYYLVVEIPEDFSKNASTVLDKNPKKLDLKYHTNAGSNYVGATIGEKAIDKLKASVSKEVTEQYTKVIFDNFKDIAKGLSDASSGAKKIDDGTKDAKNKENLAKLKESTATISDKTAQLADGAAQVTSGIQSLDSSLGKFQDSSNQIYDKSSQLAAGSGELTSKMNELLAGLQNV--QKGTPNLTNGLDQLNSKVQEGSEKAAKAEKIINALDLTKLETAVNNLEKSETAMKEFKKQLTDFENSLKNRDQA-FKNVINSSDFLTAEQKSQLINSVEKKLPQVDAPDFDQIQLPTADQLPDIATIKSSLEDVKAQVAQVKAMPEATSKLYNGAKTIQDAIDRLTEGADKIYNGSQKLTDGQTKLTAGNKQFAKAKAGSEQLVTGSSQVLFKLLDGSKQVQSGSSKLADGSASLDTGLGKLLDGTGELSSKLKDAA----DQTGDIDADDQTYGMFADPVKTKDD.......................... 571
9 -10.200[R] KOG4678 FOG: Calponin homology domain  ali follow..  10  28...........................................................................................................................................................................................................................................................................................................................................................................REFSVTVSRERSVPRGPSNPRKSVSSPTSSNTPTPTKHLRTPSTKPKQENEGGEKAASQVRELLAEAKAKDSEINRLRSELKKSPGDTEPMIRALEEKNKNFQKELSDLEEENRVLKEKLIYLEHSPNSEGAASHTGDSSCPTSITQESSFGSPTGNQMSSDIDEYKKNIHGNALRTSGSSSSDVTKASLSPDASDFEHITAETPSRPLSSTSNPFKSSKCSTAGSSPNSVSELSLAS--LTEKIQKMEENHHSTAEELQATLQELSEKLVDEKTILETSFHQHR--ERAEQLSQENEKLMNLL-------------QERVKNEEPTTQEGKIIELEQKCTGILEQGRFE--------REKLLNIQQQLTCSLRKVEEENQGALEMLKEENEKLNEFLELERHNNNMMAKTLEECRVTLEGLKSHLQGEKQKATESCEVQEMLKVARA-CNELRQELLKANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEISELESSVIKLEEQKSDLERQLKTLTKQMKEET 637
10 -9.900[S] COG5412 Phage-related protein  ali follow..  80...................................................................................................................................................................FDRLVGIDSARAKLKGLGHDAEAIDSIMDSALASVKGTAFLDEAATTAANAVAAGIPPGKEL-TRYLSLTADTAAIAGTSLGEIGAILNKVTTSGRA-ELQMLSDRGLPVYQWLAEEANTT-----ADAIFDMASKGEISTDMLLNAIEKNIGGAAKIMGEESFSAAIANIGADIARIGANFLDAGGKAGGFFSTVKPLLTEFRGFLAQVEEQAADWGVAFGQAFNNVIDRVRELKSWFDGLSPSVQTLITRAVAIGAGFLVGIGPALKVVGFLTTQFGSLLNITSLLLSPIGLVVVGITGLAVAFGVAMAKSEEFRNLVFGVFQNLASIISTIATVSPILQTMWDGAREGLASFAETVGGRLINAFELIVTVLQTVVVAVTEFVSSFIQGFQSAGGEVTSLSSLFLGFNPVLSMALLILQEFGPQIAQGFSQIASMALPLLTMLGQTLGELAAAIIPMVMNVISALMPVVMSLGMTIMDLAMAIIPILIDVFSQLLPIITQLVTTFAGIIAQVAPLVTILVSETVLNIVQAVAPALIAILGAVASAFDAIIPVVMAVLSTVVNVVANIISAISPIVAFVAGIISSIIS--------SPIVTFIAGIISSIFSVISPITSFVSGVFSTVFSIISG---FRNILGTVTSAIRTVSSIISSLS---GVVSGVFNRIFSIASSIMNRVSSVITGVFNAIQSSWTGLTSFVSGVGIGNAVQRLVNQVKSFV--NGVISGINAAIGLINK............. 821
11 -9.260[F] KOG2056 Equilibrative nucleoside transporter protein  ali follow..  17  1MSISTIRRQ---SDAQVKVREATSNDPWGPSTALMSEIADLTHNPMAFTEIMSIVWKR---KNWRHVYKSLVLLDFLIKCGHEKVAQQCRENVFTIETLKDFQHVEDNRDQGLNIREKAKQIDERLKNERT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 144

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.