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Query: [R] KOG1347 Uncharacterized membrane protein, predicted efflux pump, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDSSPNDGVHQPLLHPQPSPSPPESTNGELETVLSDVETPLFLRLRKATIIESKLLFNLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASAASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGLLGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLETWYFQILVLLAGLLENPELALDSLSICMTISGWVFMISVGFNAAISVRVSNELGAGNPKSAAFSVIIVNIYSLITCVILAIVILACRDVLSYAFTEGKEVSDAVSDLCPLLAVTLVLNGIQPVLSGVAVGCGWQTFVAKVNVGCYYIIGIPLGALFGFYFNFGAKGIWTGMIGGTVIQTFILAWVTFRTDWTKEVEEASKRLDKWSNKKQEVVPELast
1 -141.000[R] KOG1347 Uncharacterized membrane protein, predicted efflux pump  ali  100  1MDSSPNDGVHQPLLHPQPSPSPPESTNGELETVLSDVETPLFLRLRKATIIESKLLFNLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASAASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGLLGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLETWYFQILVLLAGLLENPELALDSLSICMTISGWVFMISVGFNAAISVRVSNELGAGNPKSAAFSVIIVNIYSLITCVILAIVILACRDVLSYAFTEGKEVSDAVSDLCPLLAVTLVLNGIQPVLSGVAVGCGWQTFVAKVNVGCYYIIGIPLGALFGFYFNFGAKGIWTGMIGGTVIQTFILAWVTFRTDWTKEVEEASKRLDKWSNKKQEVVPE 506
2 -55.900[V] COG0534 Na+-driven multidrug efflux pump  ali follow..  16  8....................................................QLTLFALTWPIFIEILLHMLMGNADTLMLSQYSDDAVAAVGVSNQILAVI-IVMFGFVATGTSILVAQHLGAKERENAGKVAVVSIGANLIFGIVLGLLIAFGPPILKAMQLDDSLLQEATLYLQIVGGFSVVQSLIMTAGAILRSHSFTKDVMYVTIGMNILNVIGNYLFIFGPVLGVTGVALSTVVSRTIGLFVIAILLYKRIRGELPFAYLLKRFPRVLRNLLKIGIPSAGEQLSYNASQLVITYFIAMMGTEALT--TKVYTQNLMMFVFLFAVAIGQGTQILIGHQVGAKQIQAAYVRCFRSLWIAMTVSVSMAVVFFAFSTPLLGIFTDNPDILSLGTTLLLLTIILEPGRACNLVVISSLRAAGDVKFPVYLAIVSMWGIAVPIAYLLGLPLGLGLIGVWIAFIADEWFRGLLMIWRWRKGKWQEMSFVGKKASA............ 452
3 -15.100[R] COG0728 Uncharacterized membrane protein, putative virulence factor  ali follow..  10  4....................................................LKSLAAVSSMTMFSRVLGFARDAIVARIFG--AGMATDAFFVAFKLPNLLRRIFAEGFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVA-LAAPWVIMVTADTADKFALTSQLLKITFPYILLISLASLVGXILNTWNRFSIPAFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAMR---VVKQMGPAILGVSVSQISLIINTIFASFLASGSVSW------MYYADRLMEFPSGVGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVT---LILTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRK........................... 431
4 -12.800[R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid  ali follow..  13  15..............................................................TSISTMCITIIQIVQFALLGNMTLTEFGLVGMITTVTVFAQIVLDMGFGAAL---------IQRDDATERQLSTLYWLNIMTGVLLFVLLYVSSPVIAGFYQREELVFLVRILAIMFLIAPIGQQYQYMLQKQLHFNTLSKIEIFSNVLSFGYLAIAVFM-----MDAILAYVISQVLLQSSKGILYWAVY------RKKWHPAFVFDLRGMKDFFSFGAFQLSSRLVNRLGANIDMILIGRFIGAE-ALGIYNLAYQIVTIPVLKINPIVTRVAFPIFAKNKYENSVIREGFLNMTKMLALVSFPLLIGLVSVSDAFITAVFGEK----LAAVPILNVLAIVGILRVLMNPNGSVLLAKGRADLAFYWDSGVLLLYGLSLFAAVQTG---SLLTVAWVYAIISVVNFLIGRWLLAYV.......................... 406
5 -6.900[E] KOG1288 Amino acid transporters  ali follow..  10  31DAEIPGENGKSPKKGAVPLIDEESQSTPRGSTSGDGGGGSPSMEFSSSRPGGLSTISGVFAPVAL-SMFSILLFLRMGFVVGQLG-MTILQLAMAYAIVMLTVLSL-----CAISSMISRSLGPEFGGAIGVLFFVANVFSCALYIS------FTEALMNNIGNGQFPDSPAWRFVYCVLVSLVLLVLSLLGSALFKTALITFVLISVCYGTWIVSVIFN----QTLTANYTGWSFHTLGENMKPTDFALMFAIIFSGVTGLMAGANMSG--------SVSIPTVQAVFMTLFVYVMTAFLMATTSSRYLLQNDYTVMMDTNFHRVFILIGFSTTLFSSMSNLIGSSRVLNRLSHDKLFGCLLRPASVVITWMCVVL-----VFLVGAMNKIAKLTSIFFLLSYMGV--NVATLALELTSAPNFRPTFKYFS-----ALGVVATATMMLVVD------ASMSALGVVVLMSLIMVLHYQVSSGSISQALIYHQVRKYLLLLDVRKE 578
6 -6.580[FH] KOG2466 Uridine permease/thiamine transporter/allantoin transport  ali follow..  11  115..................................................................NYCYFWLAECFNINTWQIAATGLQGLNWWQCWITIWIGYGFVGAFVVLASRVGSAYHLSSRASFGIF---FSLWPVINRVVMAIVWYSVQAYI------------AATPVSLMLKSIFGKDLQDKIPDHFGSPNATTYEFMCFFIFWAASLPFLLVPPHKIRHLFTVKAVLVPFASFGFLIWAIAFLRSLMGCMANFSTMVI----NAPDFSRFSKNPNSALWSQLVCIPFLFSITCLIGILVTAAGYENKGTRAGVFLISFVFAVAQLGTNISANSLSCGTDMSAIFPKFINIKRGSLFCAAMALCICPWN-----LMATSSKFTMALSAYAIFLALAAYLCGVAPCLPGFIAEVGAPAIKVSDGAMKLYYLSYWVGYGLSFSSYTALCYFF............................................... 577
7 -6.370[G] KOG4686 Predicted sugar transporter  ali follow..  1MAREDEERIVDN--EVSRPTEEDQVVSRAGRRDNELSLPSGGCCMPSSTSHRFMALVFMCLLGFGSYFCYDAPGALQNYFKKDLN---LTSAQFTLIYSIYSWPNVVLCFVGG---FLIDRLFGIRLGTI------IYMMILLVGQLIFACGGILDAFWMMI---------LGRFIFGIGAESLAVAQNSYAVLWFKGKELNMVFGLQLSVARFGSTVNFWVMQPIYEVSNFYKGHTALGVVLLLATLTCVMSMTCALILGWMDKRAERILQR-----IPKLTDVFSFKPPFWMVSIICVAYYVA--QNFFVDRFGLSPAEANTVDSLVYLIAAVSSPVFGFIID-------KLGRNVTWVFTATLTTIGAHALLTFTQLTPYVGM----IMGLSYSMLAASLWPLVALIIPEYQLGTAYG-----FCQSIQNLGLAVITIVAGIIVDHSGGEHMWLQLFFMGWLTIALISTGVIWAYNNKNRGNLNMTPQQRAQFVSAENYQNFE 478
8 -6.270[E] KOG1289 Amino acid transporters  ali follow..  11  1MSIRNDNASGGYMQPDQSSNASMHKRDLRVEEEIKPLDDMDSKGAVADGEVHLRKSFSLWSILGVGFGLTNSWFGISTSMVAGIGPMMIVYGIIIVALISICIGTSLGELSSAYPHAGGQFWAPPKYKRFAAYMCGSFAYAGSVFTSASTTLSVATEVMYALTHPEFIPKRWHIFVCFELLHLFLMFFNCYGKSLPIISSSSLYISLLSFFTITITVLAC-FATFNNETGWKNGGIAFIVGLINPAWSFSCLDCATHMAFEVEKP-------------ERVIPIAIMGTV------AIGFVTSFC--------VIAMFFSIQDLDAVLSSTTGAPILDIYNQALGN------KSGAIFLGCLILFTSFGCVIACHTWQARLCWSFARDNGLWSQVNPHTGVPLNAHLMSCAWITLIGLLYLASSTAFQSLITGCILLSYIIPVICLL--PFWLGKFGFFSNIVLLGWTVFSVVFFSF............................. 481
9 -6.230[S] KOG2568 Predicted membrane protein  ali follow..  11  117.................................................................................................................................................................................................EILITKTGIYNLLFISCDPQLKGLKMTGKTVWKNPDGYLPGRMAPLVN--FYVYMSLAYLLLS-----VWFFQYLRFRMDILPLQHCITAVILLGLLEMLFWYLDYANFNHTGMRPLALTTWVVTIGA------LRKTVSRILILCVSMGFGVVKSTLGGLTSKVLLVGVTYFIASEILDIAEHVGIIDDMSGRSKLFLVLPDAFLDAFLILWIFTSLSKTLEQLQMKRTSVKLEIYRKFSNALAVMVVASVAWIVPFNERWQTAWTITAFWDVIAFLLLCIICYL--WTPSQNSQRDANMKLMMDRYAYSGD 424
10 -6.230[R] COG4147 Predicted symporter  ali follow..  12  36...................................................................IIMFLIFVVFTLGITSRSDYYTAGGNITGFQNGLAIAGDYMSAASFL--ISALVFTSG----------DGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSEAMAVH-ALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLSM-------YWSKLTTRGAMMGGWLGLITAVVLMIL............................... 478

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.