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Query: [R] KOG1490 GTP-binding protein CRFG/NOG1 (ODN superfamily), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHAKLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYGDSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDISGSCGYTIAQQAALFHSIKSLFMNKPLVIVCNKTDLMPMENISEEDRKLIEEMKSEAMKTAMGASEEQVLLKMSTLTDEGVMSVKNAACERLLDQRVEAKMKSKKINDHLNRFHVAIPKPRDSIERLPCIPQVVLEAKAKEAAAMEKRKTEKDLEEENGGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFIDPDILQRLAELEREEGIREAGVEEADMEMDIEKLSDEQLKQLSEIRKKKAILIKNHRLKKTVAQNRSTVPRKFDKDKKYTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSEDAGNDAMDVDDEQQSNKKQRVRSKSRAMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARRGEADRVIPTLRPKHLFSGKRGKGKTDRRLast
1 -202.000[R] KOG1490 GTP-binding protein CRFG/NOG1 (ODN superfamily)  ali  100  1MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHAKLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYGDSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDISGSCGYTIAQQAALFHSIKSLFMNKPLVIVCNKTDLMPMENISEEDRKLIEEMKSEAMKTAMGASEEQVLLKMSTLTDEGVMSVKNAACERLLDQRVEAKMKSKKINDHLNRFHVAIPKPRDSIERLPCIPQVVLEAKAKEAAAMEKRKTEKDLEEENGGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFIDPDILQRLAELEREEGIREAGVEEADMEMDIEKLSDEQLKQLSEIRKKKAILIKNHRLKKTVAQNRSTVPRKFDKDKKYTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSEDAGNDAMDVDDEQQSNKKQRVRSKSRAMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARRGEADRVIPTLRPKHLFSGKRGKGKTDRR 671
2 -78.400[R] COG1084 Predicted GTPase  ali follow..  31  2.......IIPTVPTTDELLDKGFRRARKAASLKSSKIPGQKKAKVIESTRVQTACQVIRDRLKMIIQRIPDIESLPEFYQDYIDVTVGVDELKKSLGALNWAVGILNQLESDYMARIKRSKPS-DASHLRREAFGRISSVIKRIEGDLDFLDFAKNKLRNMPTVDLDAFTVVIAGFPNVGKSTLLRTLTGAEPEVADYPFTTKGIQIGHLERKWKRIQVIDTPGLLDRPVEDMNNIELQAMVALENIADVIMFIFDASETCGYTLESQYSLYLGIRS-VFDIPVVTVFNKMDLAENVKYLEEYINMVED-----------------PLKVSAFEGRGVSKIIKKLEGLYEKETREAHDN........................................................................................................................................................................................................................................................................................................................ 335
3 -47.800[R] COG0536 Predicted GTPase  ali follow..  13  61...............................................................HFHPHVKAERGANGAGDHRNGARGKDLVLEVPPGTV------VLNEKGETLADLTSVGMKFIAAAGGNGGLGNAALASKARKAPGFALIGEPGEAHDLILELKSMADVGLVGFPSAGKSSLISVMSAAKPKIGDYPFTTLQPNLGVVNVGHETFTMADVPGLIPGASEGKG----LGLDFLRHIERTSVLVHVVDTATMDPGRDPISDIEALEAELSQRPRLVVLNKADVPEAEELAEFLKEDIEK------------QFGWPVFIISAVARKGLDPLKYKLLEIVQDARKKRPKEKAESVRTKGQFQIKPDPEVQGGFIITGEKPERWILQTDFENDEAVGYLADRLAKLGIEDGLRKAGAHVGANVTIGGISFEWEPMTTAGD------DPVLTGRGTDVRLEQTSRISAAERKRASQVRRGLIDELDYGEDQEASRER....................................................................................................................................................................... 498
4 -42.300[T] KOG1487 GTP-binding protein DRG1 (ODN superfamily)  ali follow..  11  2...........................................................................................................SSTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKG----RGRQVIAVARTCNLILIVLDLKPLGHKKIIENELEGFGIRLNSKPPNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADD--------LIDVVEGNRVYIPCIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDE..................................................................................................................................................................................................... 359
5 -41.600[R] COG1163 Predicted GTPase  ali follow..  16  2...........................................................................................................STTVEKIKAIEDEMARTQKNKATSFHLGQLLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG----RGKQVIAVARTCNLLFIILDNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEAS....................................................................................................................................................................................................................................................................................................................................... 238
6 -40.200[R] KOG1489 Predicted GTP-binding protein (ODN superfamily)  ali follow..  19  285.................................................................................................................LDLNQPMTKPVCLLKGGQGGLGNMHFLTNLIRNPRFSKPGRNGLEQHFLFELKSIADLGLIGLPNAGKSTILNKISNAKPKIGHWQFTTLSPTIGTVSLGQDVFTVADIPGIIQGASLDKG----MGLEFLRHIERSNGWVFVLDLSNKNPLNDLQLLIEEVGEKVKTKNILIVCNKVDIDAEKSESFAKYLQVEKFS---------KSQEWDCVPISALREKT.............................................................................................................................................................................................................................................................................................................................................. 499
7 -39.500[T] KOG1486 GTP-binding protein DRG2 (ODN superfamily)  ali follow..  11  4..............................................................................................................IERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASG-EGFEVTKYGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGIIEGASEGKG----RGRQVIAVAKSSDLVLMVLDASKSEGRQILTKELEAVGLRLNKTPPQIYFKKKKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDD--------FIDVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQPDF------DEPFVLSSDRGGCTVED------FCNHVHRTLVKDMKYAL--TSTRHNPQNCGLSQHLEDEDVVQIVKKKERDEGGRGRFKSHSNAPARIADREKKAPLKQ................................................................................................................................................ 399
8 -29.800[R] COG3596 Predicted GTPase  ali follow..  13  8...........................................................................................................................................VLQPLQNSLSGLPLWVSERQQINQLTHYEPVIGIMGKTGAGKSSLCNALFAGEVSVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESGVRDTEYAAL----YREQLPRLDLILWLIKADDRALATDE-HFYRQVIGEAYRHKMLFVISQSDKAEPTSGGNISTEQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLRVMAERMIKCLPREPSS............................................................................................................................................................................................................................................................................................................................ 222
9 -27.100[R] KOG2486 Predicted GTPase  ali follow..  13  126............................................................................................................................................................KTEDCP--ADGLPEFALVGRSNVGKSSLLNSLVRRKALTSKKPGKTQCINHFRIN---DKWYLVDLPGY-SAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDL-EYASWLGQ--NQVPMTLIFTKCDKRKKKKNGGKKPE--ANIKEFQDLIQGFFETTPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH............................................................................................................................................................................................................................................................................................................................ 318
10 -26.200[R] COG1159 GTPase  ali follow..  19  11..........................................................................................................................................................................IAIVGRPNVGKSTLLNKLLGQKISISRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEEKRAIN--RLMNKAASSSIGDVELVIFVVEGT--RWTPDDEMVLNKLRD--GKAPVILAVNKVDNVQEKVDLLPHLQFLASQMN------------LDIVPISAETGMNVDTIAGIVRKHL.................................................................................................................................................................................................................................................................................................................................. 173
11 -24.400[R] COG0218 Predicted GTPase  ali follow..  17  24......................................................................................................................................................................ELPEIALAGRSNVGKSSFINTMLNRKARTSGKPGKTQLLNFFNID---DKMRFVDVPGYARVSKKEREKWGCMIEEYLTTRENLRAVVSLVDLRHDPS-ADDVQMYEFLKY--YEIPVIIVATKADKIPRGKWNKHESAIKKKLNFDP---------SDDFILFSSVSKAGMDEAWDAILEKL.................................................................................................................................................................................................................................................................................................................................. 195
12 -24.000[P] COG0370 Fe2+ transport system protein B  ali follow..  16  5.........................................................................................................................................................................TYCILGNPNTGKTSLFNALTGSYEYVGNWSGVTVEKKVGTL--RSKTGKLIDLPGIY--DLNPISRDETVVTRFLLE-FDCMLNIVDSS-----QIERNLNLTVQLLEY--GAPVVMGLNMIDVAAGRGIHLNIQNLAKKL-------------RIPILPVVARSGKGTEDILSTLSEKHVAPAIPLVLQYGEPAEKAIKEIQALTKELIPAKQSRWLAIQFLSKNEVTEAFLTSNSAFEQLQQI---RAELESELNGKLENHFHQVRASYIHDICLTIPLSDKLDKIFTHKL................................................................................................................................................................................................................. 280
13 -24.000[E] COG4917 Ethanolamine utilization protein  ali follow..  14  1.......................................................................................................................................................................MKRIAFVGSVGAGKTTLFNALQGNYTLARK-------------AVEFNDKGDIDTPGEY----------PRWYHALITTLQDVDMLIYVHGAN-----DPESRLPAGLLDIGVSKRQIAVISKTDMPDAD--VAATRKLLLETGFEE-----------PMFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE..................................................................................................................................................................................................................................................................................................................... 159
14 -23.900[J] COG0012 Predicted GTPase, probable translation factor  ali follow..  21  2.........................................................................................................................................................................EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAI-IPVKMIDVAGLVPGAHEGRG----LGNKFLDDLRMASALIHVVDVTGKTDAEDPIEDIEFLEREIINKPMIIAANKADAASEEQINRLIKEGEKR--------------GYIVVPTSAAAELTLRKAAKA....................................................................................................................................................................................................................................................................................................................................... 263
15 -21.700[R] COG0486 Predicted GTPase  ali follow..  19  132.........................................................................................................LDLAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVAHLNDIITQLDHV-SILREGMKVVIAGRPNAGKSSLLNALAGREAAVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL----REATDEVERIGIVAWSEIEQADRILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQN-------------------GYTVITLSAKTQQGIALLREHLKQSM.................................................................................................................................................................................................................................................................................................................................. 387
16 -21.700[J] KOG1191 Mitochondrial GTPase  ali follow..  17  144........VGIVPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVLAVPMLAPR-EDVVELQRRVLRTCVEAGARLAEPGEFTLLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCNKITSMSQDVESA-KLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAVTEVAGTTRDVVEANVTVRGVPITLLDTAGI----RETNDIVEKIGVESETAAKVADVIIMAVSAVEGWT-EEDTELLRKIQSLYLKQPMILVMNKIDCAPPGSCDQLEDQRKKEE------------VFHKSVFTSAVTGQGIEELEDAILEILGLDRVPTG.......................................................................................................................................................................................................................................................................................................................... 541
17 -20.800[R] COG1160 Predicted GTPases  ali follow..  21  218..........................................................................................................................................................................IAIVGRPNVGKSTLTNRILGED--VFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDL-SLLGFILN--AGRSLVIVVNKWDGLDQDVKDRVKSELDRRLDFIDF---------ARVHFISALHGSGVGNLFDSIKEAY--ACATQKMTTSLLTRILQMATDEHQPPMIGGRRI............................................................................................................................................................................................................................................................................................... 418
18 -20.300[R] KOG0075 GTP-binding ADP-ribosylation factor-like protein  ali follow..  12  22.........................................................................................................................................................................ELTLVGLQFSGKTTFVNVIASGQFAEDMIP--TVGFNMRKITRGNVTIKVWDIGG------------PRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLKPQLAGIPVLVLGNKRDLPGALDETGLIERM---------NLSSIQDREICCYSISCKEKDNIDITLQWLIQHSKSQS.............................................................................................................................................................................................................................................................................................................................. 185
19 -20.300[R] COG2229 Predicted GTPase  ali follow..  13  6..........................................................................................................................................................................IIFTGPVGVGKTTAIAAISDEALTLDRKRNTTVAMDYGAISLEDTKVHLYGTPG------------ERFNFMWEILSQGSMGLVLLLDNARTNPLKDLEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAKH------------NLNVPVFEIDARKEDDVKQLVSAMLFSIDPG............................................................................................................................................................................................................................................................................................................................... 175
20 -19.700[U] KOG0077 Vesicle coat complex COPII, GTPase subunit SAR1  ali follow..  9  23..........................................................................................................................................................................ILFLGLDNAGKTTLLHMLKDERLVQHQ---PTQHPTSEELSIGKIKFKAFDLGG------------QIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALDEALATVPFLILGNKIDIASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI.................................................................................................................................................................................................................................................................................................................................. 192
21 -19.400[R] COG2262 GTPases  ali follow..  15  63..................AVEIAEAVKATGASVVLFDHALSPAQERNLERL--CECRVIDRTGLILDIFAQ------------RARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQREQGRQ---IKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVDVGETVLADTVGFIRH----HDLVAAFK-ATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIAHEIPTLLVMNKIDMLEDFEPRIDRDE----------------ENKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTL......................................................................................................................................................................................................................................................................................................................... 370
22 -19.100[R] KOG0410 Predicted GTP binding protein  ali follow..  17  174..................VAEIKSAINALDVETVIFDDELSPGQLRNLEKAFGGDVRVCDRTALILDIFNQ------------RAATHEAALQVALAQMEYQLPRLTRMWTHLERQ-VKGMGEKQIEVDKRILRTQIGVLKKELES------RKHRKQYRSRRVAIPVPVVSLVGYTNAGKSTLLNQLTGANVLAENRLFATLDPTTRRVQMNGKEFLLTDTVGFIQK----TTLVAAFR-ATLEEIAESSLLVHVVDISHPLAEQQIEAVEKVMSELVSSIPKLVVWNKVDRVDDPQKVKLEAEETGDT-----------------ICISALTGEGLDDFCNAVHEKLKDSMVWVEA......................................................................................................................................................................................................................................................................................................................... 481
23 -18.900[U] KOG0072 GTP-binding ADP-ribosylation factor-like protein ARL1  ali follow..  17  20..........................................................................................................................................................................ILILGLDGAGKTTILYRLQVGEVVTT---IPTIGFNVEQVTYKNLKFQVWDLGG------------TSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMEEELAGAILVVLANKQDMDGCMTVAEVHHAL---------GLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSRK.............................................................................................................................................................................................................................................................................................................................. 181
24 -18.800[R] KOG0074 GTP-binding ADP-ribosylation factor-like protein ARL3  ali follow..  17  20..........................................................................................................................................................................ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQSQGFKLNVWDIGG------------RKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELEEKLSCVPVLIFANKQDLLTAAPASEIAEGL---------NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK.............................................................................................................................................................................................................................................................................................................................. 181
25 -18.700[R] COG1100 GTPase SAR1 and related small G proteins  ali follow..  15  21..........................................................................................................................................................................ILILGLDGAGKTTILYRLQIGEVVTT----PTIGFNVETLSYKNLKLNVWDLGG------------TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMEEELQDAALLVFANKQDQPGALSASEVSKEL---------NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL............................................................................................................................................................................................................................................................................................................................. 183
26 -18.700[U] KOG0071 GTP-binding ADP-ribosylation factor Arf6 (dArf3)  ali follow..  15  24..........................................................................................................................................................................ILMLGLDAAGKTTILYKLKLNQSVVT---IPTVGFNVETVTYKNIKFNVWDVGG------------DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIDREMRDCLLLVLANKQDLPGALSPAQITDVL---------QLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKLK............................................................................................................................................................................................................................................................................................................................... 184
27 -18.600[U] KOG0070 GTP-binding ADP-ribosylation factor Arf1  ali follow..  14  20..........................................................................................................................................................................ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGG------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMEDELRDAVLLVFANKQDLPNAMNAAEITDKL---------GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK............................................................................................................................................................................................................................................................................................................................... 180
28 -18.500[UZ] KOG0073 GTP-binding ADP-ribosylation factor-like protein ARL2  ali follow..  14  19..........................................................................................................................................................................LLMLGLDNAGKTTILKKFNGEDIDTIS---PTLGFNIKTLEHRGFKLNIWDVGG------------KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLEERLAGATLLIFANKQDLPGALSSNAIREAL---------ELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI.............................................................................................................................................................................................................................................................................................................................. 180
29 -18.000[U] KOG0076 GTP-binding ADP-ribosylation factor-like protein yARL3  ali follow..  15  20..........................................................................................................................................................................ILILGLDNAGKTTFLETLKKEYSLAFKALEKTVGQNVATIPVDSKQLKFWDVGG------------ESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVDEEIEGVPILMLANKQDRQDRMEVQDIKEVF-------NKIAEHISARDSRVLPISALTGEGVKDAIEWMIVRLERNKKSRPPIYK...................................................................................................................................................................................................................................................................................................................... 198
30 -17.900[R] KOG1491 Predicted GTP-binding protein (ODN superfamily)  ali follow..  17  22.........................................................................................................................................................................KAGIVGLANVGKSTFFQAITRCPGNPANYPFATIDPEEARVIVPSPRLTVYDIAGLTKGASAGEG----LGNAFLSHIRSVDSIYQVVRCFDDAEIIDPVRDLEIINQELRLKDIEFAQKALEGAEKIAKRGGQSLEVKQKKEE...................................................................................................................................................................................................................................................................................................................................................................... 186
31 -17.100[U] KOG0090 Signal recognition particle receptor, beta subunit (small G protein superfamily)  ali follow..  17  56........................................................................................................................................................................NTVLLSGLSGSGKTVLFYQLRDGSSHQGAV--TSMEPNEGTFKGKVKPVHLIDVPG--------HSRLISKLEEYLPRAA-AVVFVVDFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTDKVTAHTKEFIRKQMEKEI......................................................................................................................................................................................................................................................................................................................................................................... 198
32 -17.100[U] KOG3887 Predicted small GTPase involved in nuclear protein import  ali follow..  13  56.................................................................................................................................................................PFSTEVKPRILLMGLRRSGKSSIQKVVHKMSPNETLFLESTNKICREDVSNSFVNFQIWDFPG-----QIDFFDPTFDYEMIFRGTG-ALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIH---SFYLTSIYDHSIFEAFSKVVQKLIPQ............................................................................................................................................................................................................................................................................................................................... 240
33 -16.500[R] KOG0395 Ras-related GTPase  ali follow..  15  22..........................................................................................................................................................................MVVLGASRVGKSSIVSRFLNGR--EDQYTPTIEDFHRKVYNIRGDQLDILDTSG--------NHPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVKSCLKNKPMVICGNKNDHGELC----------RQVPTTEAELLVSGDENCAYFEVSAKKNTNVDEMFYVLFSMAKLPHEMSPALHRKIS................................................................................................................................................................................................................................................................................................................... 205
34 -15.900[T] KOG3886 GTP-binding protein  ali follow..  11  43..........................................................................................................................................................................VLLMGKSGSGKTSMRSIIANYIARDTRRLGATILDRIHSLQIGNLVLNLWDCGG---QDTFMENYFTSQRDNIFRNVE-VLIYVFDVSRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECS-------CFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIE............................................................................................................................................................................................................................................................................................................... 260
35 -15.600[R] KOG0393 Ras-related small GTPase, Rho type  ali follow..  17  6..........................................................................................................................................................................CVVVGDGAVGKTCLLLSYTTNA---GEYILTVFDTYSTNVMVDGRPINLSDTAG-----QDDYDQFRHLSF------PQTDVFLVCFALNNPASFENVRAKYPEVSHHCPNTPIILVGTKADLREDRDTIERLRESRLQVSHTQGYVMAKEIKAVKYLECSALTQIGLKQVFDEAIRTGLTPPQTPQTRAKK..................................................................................................................................................................................................................................................................................................................... 189
36 -15.200[T] KOG4252 GTP-binding protein  ali follow..  18  12..........................................................................................................................................................................MVVVGNGAVGKSSMIQRYCKGIKKTIGVDFLERQIQVN----EDVRLMLWDTAG------------EEFDAITKAYYRGAQACVLVFSTTDRGSFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAK------------RLRLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPELTH.................................................................................................................................................................................................................................................................................................................. 185
37 -15.100[R] KOG2485 Conserved ATP/GTP binding protein  ali follow..  14  24................................................GKINWFPGHMAAATRAIRNRLKLSDLV-----EVRDARIPLSSANEDLQSQMSAKRRIIALNKKDLANPNVLNFFKWTRHFESSKQDCIAINAHSRSSVMKLLDLVELKLKEVIAREPTL-LVMVVGVPNVGKSALINSIHQIAATVGPLPGVTQDIA------HRPSIYVLDSPGVLVPSIPDIETGLKLALS............................................................................................................................................................................................................................................................................................................................................................................................................................................. 226
38 -15.000[R] KOG1673 Ras GTPases  ali follow..  12  104..........................................................................................................................................................................ISLLGDCQTGKTTFVVKYVGDE-------NQSFLEMTGLVQGVTISFSIWDVGG-------DEKRSKDHIPIACK--AVAILFMFDLTSR--STLNSVFGWYSQARKWNKTAIPILIGTKFDDFVRLPPNLQWTIVTQA-------RAYAKVMNASLFFSSATHNINVNKIFKFILARLFNLPWKIDRNLTLGEPIID............................................................................................................................................................................................................................................................................................................... 285
39 -15.000[R] KOG0079 GTP-binding protein H-ray, small G protein superfamily  ali follow..  15  13..........................................................................................................................................................................LLIIGDSGVGKSSLLLRFADNTITTIGVDFKIRTMDIN----QRVKLQIWDTAG------------ERFRTITSTYYRGTHGVVVVYDVTNGESFGNVKRWLQEIENNCDSVQKVLVGNKCEENERRVVLESDARNYAQ------------SMNISFFETSAKEDKNVEPMFTCITSLVLTAKLANPQSASKDQSRTGGVSLKDNSGSTNQ.................................................................................................................................................................................................................................................................................................. 202
40 -14.800[U] KOG0096 GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily  ali follow..  11  15..........................................................................................................................................................................LVLVGDGGTGKTTFVKRHLTGEIATIGVEVHPLSFYT---NFGEIKFDVWDTAG------------EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTIT--------------FHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQE.................................................................................................................................................................................................................................................................................................. 202
41 -14.800[J] COG5257 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)  ali follow..  16  8.........................................................................................................................................................................NIGLVGHVDHGKTTLTKALSGVWTTHSEETKRGISIRLGYADITLRKVSFVDAPG------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD-VIGVKDVIVVQNKIDIVSKERALESYREIKEFVKGTCA-------EDAPIIPVSAQQGANIDILIETIEERI.................................................................................................................................................................................................................................................................................................................................. 197
42 -14.400[U] KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases  ali follow..  14  23..........................................................................................................................................................................LVLLGESAVGKSSLVLRFVKGQESTIGAAFLTQTVCLD----TTVKFEIWDTAG------------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSNKADLANKRAVDFQEAQSYAD------------DNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVD............................................................................................................................................................................................................................................................................................................... 200
43 -14.100[J] KOG0466 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)  ali follow..  15  43.........................................................................................................................................................................NIGTIGHVAHGKSTVVKAISGVHTV-MPDEFPTDIPGTKGNFRLVRHVSFVDCPG------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIE-IMKLKHILILQNKIDLVKERQAKEQYEQILAFVQGTVA-------EGAPIIPISAQLKYNIEVVCEYIVKKI.................................................................................................................................................................................................................................................................................................................................. 243
44 -14.000[K] KOG1534 Putative transcription factor FET5  ali follow..  13  6..........................................................................................................................................................................AFVCGVASSGKSTFCGALMNLDPAAENFEWEPEELDYGEIGDYDEDYLIFDMPGQIE-THVPILPALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKDNGEINETTNPKFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYIDDATQWYEDQEPKDPDRFEADDLE.............................................................................................................................................................................................................................................................................................................. 273
45 -13.900[OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase  ali follow..  16  1....................................................................................................................................................................MKRPLIIGVGGPVGAGKTMLIERLTRY--------LSTKGYSMAAITNDDLQLLFLESGG------------DNLSATFSPDLVDFSIYIIDVAQG---------EKIPRKGGQGMIKSDLFIINKVDLAPYVGANVEVMK----------ADTLKSRGNKDFFVTNLKTDEGLKSVADWIEKRLQLALLEE........................................................................................................................................................................................................................................................................................................................... 206
46 -13.900[R] KOG0088 GTPase Rab21, small G protein superfamily  ali follow..  16  15..........................................................................................................................................................................IVLLGEGCVGKSSLVLRFVENKLSTIQASFQNKTVNVE----CQADLHIWDTAG------------EKYHALGPIYYRGSNGVLLVFDITDRKSFEKVKNWVLEIKTCLGNTAEILIVNKIDLEEERQVTRQDAEAYAE------------SEGALYMETSAQDNVGISDAFESLTAKMIEHSRTRSTEPPSTNRSIR............................................................................................................................................................................................................................................................................................................... 192
47 -13.900[R] KOG0080 GTPase Rab18, small G protein superfamily  ali follow..  18  11..........................................................................................................................................................................ILIIGESGVGKSSLLLRFTDDTAATIGVDFKVKTISVD----NKAKLAIWDTAG------------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLNKIDKENREVDRNEGLKFARKH-------------SMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN..................................................................................................................................................................................................................................................................................................................... 182
48 -13.800[U] KOG0094 GTPase Rab6/YPT6/Ryh1, small G protein superfamily  ali follow..  14  12..........................................................................................................................................................................LVFLGDQSVGKTSIITRFMYDKQATIGIDFLSKTMYLE----RTVRLQLWDTAG------------ERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLVNKTDLVEKRQVSIEEGDSKGR------------EYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTKNEDMVD.................................................................................................................................................................................................................................................................................................................. 186
49 -13.700[TU] KOG1954 Endocytosis/signaling protein EHD1  ali follow..  14  32.............................................................................................................TRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSP-DPDFDAKPMILLVGQYSTGKTTFIRYLIGPEPTTDRFQFRALS-GFGNAFLNRESVTIVDTPGILSGEKQDRGYDFTGVLEWFAERVDRIILLFDAHKDISDEFKRCIEALAGNEDKIR-----IVLNKSDMVDHQQLMRVYGALM............................................................................................................................................................................................................................................................................................................................................................................ 271
50 -13.700[R] KOG1533 Predicted GTPase  ali follow..  17  3.........................................................................................................................................MNLNEKKQLLRVRVYATSEKGENLGSTHWTMYGVLVIGAPGAGKSTFCAGLTNLDPANDTMAYAPDRLGLGKIEANHKKYLIIDCPGQLELYKSEGELWKVIRFLEKSGVRLCALHLAD-SLYCSDPSKFISVALSTLATMVTEMPQVNCLSKADLFSEDLLNEVPGLEKYRKLNEAICGVISDFDLVSFVPLAVENKESMMKVIQMVDAANGFSLTEQGDIRELILN.................................................................................................................................................................................................................................................................................................................. 297
51 -13.600[R] KOG0394 Ras-related GTPase  ali follow..  17  11..........................................................................................................................................................................VIILGDSGVGKTSLMNQYVNKKKATIGADFLTKEVQFE----RLFTLQIWDTAG--------QERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQAS--ENFPFVLIGNKVDVDDGNS---------RVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSGEEEELYLPD..................................................................................................................................................................................................................................................................................................................... 189
52 -13.500[U] KOG0095 GTPase Rab30, small G protein superfamily  ali follow..  17  12..........................................................................................................................................................................IVLIGNAGVGKTCLVRRFTQGLGATIGVGFMIKTVEIN----EKVKLQIWDTAG------------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVNKIDLAERREVSQQRAEEFSE------------AQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV..................................................................................................................................................................................................................................................................................................................... 183
53 -13.500[TU] KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins  ali follow..  17  11..........................................................................................................................................................................LLLIGDSGVGKSCLLLRFADDSISTIGVDFKIRTVEQD----KTIKLQIWDTAG------------ERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRY-ENVNKLLVGNKCDLTSQKVVSTETAKAFAD------------ELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTV................................................................................................................................................................................................................................................................................................................. 186
54 -13.500[U] KOG0093 GTPase Rab3, small G protein superfamily  ali follow..  18  25..........................................................................................................................................................................ILIIGNSSVGKTSFLFRYADDSVSTVGIDFKVKTIYRN----KRIKLQIWDTAG------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVNKCDMEDERVVSSERGRQLAD------------HLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVT.................................................................................................................................................................................................................................................................................................................. 199
55 -13.500[O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis  ali follow..  13  7..............................................................................................PLKHFVLAKKGITAIFDQLLEFVTEGSHFVEATYKNPE----------DRIATEDDLVEMQGYKDKLSIIGEVLSRVAFFGRTSSGKSSVINAMLWD--KVLPSGIGHITNCFLSVEGTDGDLVLVDSPGT--------DVTTELDSWIDKFCLDADVFVLVANSESTLM-NTEKHFFHKVNEWLSKPNIFILNNRWDASASEPVRRQHMERCLHFLVEELKVANALEAQNRIFFVSAKEVQEFQNFEQIFEECISQSAVKTKFEQ....................................................................................................................................................................................................................................................................................................................... 339
56 -13.500[TU] KOG0078 GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins  ali follow..  16  12..........................................................................................................................................................................LLLIGDSGVGKSCLLLRFSEDSITTIGIDFKIRTIELD----KRIKLQIWDTAG------------ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILINKCDCEDQRQVSFEQGQALAD------------ELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD............................................................................................................................................................................................................................................................................................................... 189
57 -13.400[U] KOG0086 GTPase Rab4, small G protein superfamily  ali follow..  21  11..........................................................................................................................................................................FLVIGSAGTGKSCLLHQFIENKNHTIGVEFGSRVVNVG----KTVKLQIWDTAG------------ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCNKKDLDPEREVTFLEASRFAQ------------ENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGS.................................................................................................................................................................................................................................................................................................................. 185
58 -13.300[U] KOG0097 GTPase Rab14, small G protein superfamily  ali follow..  18  14..........................................................................................................................................................................YIIIGDMGVGKSCLLHQFTEKKPHTIGVEFGTRIIEVS----QKIKLQIWDTAG------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILINKADLEAQRDVTYEEAKQFAE------------ENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAES.................................................................................................................................................................................................................................................................................................................. 188
59 -13.300[J] COG0050 GTPases - translation elongation factors  ali follow..  11  14.........................................................................................................................................................................NVGTIGHVDHGKTTLTAAITTVLAKTYGGSARTINTSHVEYDTPARHYAHVDCPGYVKNMITGAAQMD------------GAILVVAATDGPMPQTREHILLGRQVG-----PYIIVFMNKCDMVDDEELLELVEMEVRELLSAY--------PGDDLPVVRGSALKALEGEAEWE...................................................................................................................................................................................................................................................................................................................................... 186
60 -13.300[V] KOG1707 Predicted Ras related/Rac-GTP binding protein  ali follow..  11  17..........................................................................................................................................................................IVVVGEKGSGKSSLIMAAARNTFHPNIPSLLPYTNLPSEFFPDRIPATVIDTSS------------PEDKGKVVKEVRQADAIVLTFAFDRPETLDRLSKYLPLFRQLEVRVPIIVAGYEVDNKEAYNHFS--------IEQITSALMKQYREVETSIQWSAQRLDQAKDVLYYAQKAVIDFDQENNVLKPRCIAALKRIFLLSDHNMDG--------------------------ILSDEELNELQKKCFDTPLVPCEI-----------------KQMKNVMQVTFPQGVNE--------------------------------RGLTLDGFLFLNTRLIEEARIQTLWTMLRKFGYSNDLRLGDDLVPYSSFKRQADQSVELTNVAIEFLREVYEFFDSNGDNNLEPHEMGYLFETAPESPWTKPLYKDVTEENMDGGLSLEAFLSLRFPSDDPSSAVRVTRKRVLDRKEKKSERKV-----QCFVFGPKNAGKSA.. 442
61 -13.200[U] KOG0087 GTPase Rab11/YPT3, small G protein superfamily  ali follow..  16  13..........................................................................................................................................................................TVLIGDSGVGKSNLLMRFTRNEKSTIGVEFATRNIVLD----KKIKAQIWDTAG------------ERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVNKTDLLHLRAVSTEEAQAFAA------------ENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGD..................................................................................................................................................................................................................................................................................................................... 184
62 -13.200[R] COG1161 Predicted GTPases  ali follow..  12  24......GALKKKIAERDQMEAVQAGDEGSEASIKTEDLYCQRCFRLRHYNEIAPTSLTDADFLRLLKEIGQHDAL-----NVVDIFDFNGSLIPNLHKLTGGNDLLMVANK--RDVLPKSLKVGKLTAWLREQAASRSLKPKDILVTSAQNKDDVAELMEAIEYYRRGRDVYVVGVTNVGKSTLINAIIKSAITTSRFPGTTLDKI-------DEDSALIDTPGIIH............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 242
63 -13.200[R] COG5258 GTPase  ali follow..  15  9.......................................................................................GNVEYKLTLGPAGQLKRRLAEGGGEAVYLIGVSND--LPDEELVKALETLREMARRVGASLYILRVSEGIRGKVAEVLLRAVSVVALGNVDAGKSTLVGVLTTARSYASRYK-RTSAVSLRLLGFSGDKVLLVDVGG-------HERYLRTALRGLFSSQPDYVMLVVAANSGVQKMTKEHLGIAVAIG------PVFVVVTRIDITPSEVFQKTVEEVVRILKMPGVSKAMPAGRVAPVFYVSSVTGHGLDLLLRFL...................................................................................................................................................................................................................................................................................................................................... 324
64 -13.100[U] KOG0098 GTPase Rab2, small G protein superfamily  ali follow..  16  9..........................................................................................................................................................................YIIIGDTGVGKSCLLLQFTDKRDLTIGVEFGARMVTID----KQIKLQIWDTAG------------ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTSWLEDARQHSNSNMVIMLINKSDLEARREVKREEGEAFAR------------EHGLVFMETSAKTAANVEEAFIDTAKEIYRKIQEGVFDINNEAN.................................................................................................................................................................................................................................................................................................................. 183
65 -12.800[J] KOG0460 Mitochondrial translation elongation factor Tu  ali follow..  12  55.........................................................................................................................................................................NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMTISSAHVEYETANRHYAHVDCPGYIKNMITGAATMD------------GAIIVVSATDGQMPQTREHLLLARQVG-----KQIVVYINKVDMVEPDMIELVEMEMRELLSEYGF-------DGDNTPIVSGSALCALEGREPEI...................................................................................................................................................................................................................................................................................................................................... 226
66 -12.700[U] KOG0081 GTPase Rab27, small G protein superfamily  ali follow..  16  12..........................................................................................................................................................................FLALGDSGVGKTSVLYQYTDGKITTVGIDFREKRVVYRASGPDGAHLQLWDTAG------------ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLNKSDLEDQRVVKEEEAIALAE------------KYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEG.................................................................................................................................................................................................................................................................................................................. 197
67 -12.600[R] KOG0091 GTPase Rab39, small G protein superfamily  ali follow..  14  12..........................................................................................................................................................................LILIGDSTVGKSSLLKFFTDGKDPTVGVDFFARLIEMK--DGTQIKLQLWDTAG------------ERFRSITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALCKLDLINAGGHREVTTEEAQKFAKQ---------HGLHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAED..................................................................................................................................................................................................................................................................................................................... 188
68 -12.500[R] KOG2203 GTP-binding protein  ali follow..  12  43..........................................................................................................................................................................VAIMGPQSSGKSTLLNHLFKTSFREMD---TTKGIWMARCVGIEPFTIAMDLEGTRERGEDDTTFEKQSALFAIA-VADIVLICHDIGREQAANKPLLKTVFQVMLRLFSKTTLLFVIRDKTKTPIELLERALREDIQKI--------------DSVRKPEAHKNTPLNEFFNVMIVALSSYEEKEKQFEQEVAELRQRFFHSISPGGLAGDRRGVVPASGFSFSSQQIWKVIKENRDLDLPAHKVMVATVRCEIANEKLRDLATNESWLELHEAAEGGLVPGFGKKLSSILEKYFSEYDAEAIYFDEGVRKEKRLQLKLNALDFVYPSYATMLGHLRSNALESQSLNQGEGFAKAVRDSQQSCLMVFDKGCEDAAVKQATWDASKIREKLCRDIDAHTFFARSAKLSELTANYEKRLTQASIRKLLKRETETAVTDFLDVVTGFELDHAKIDAMVQNLKNYSQSLVEKKARE-EAAKILIRMKDRF.............. 550
69 -12.400[R] KOG0083 GTPase Rab26/Rab37, small G protein superfamily  ali follow..  18  471..........................................................................................................................................................................VIMLGDSGVGKTSLLIRFRDGRYVPSYFLST-----VGIVDGTRVKLQIWDTAG--------QERFRSVTHAYYRD-AHALLLLYDVTNK--TTYDNIRAWLGEIREYAQEDVVIVLINKADCSGSERQVKRED------------ERLGREHNVPFMETSAKTGLNVELSFTAVARQLKSRGYEHGDDGK...................................................................................................................................................................................................................................................................................................................... 643
70 -12.200[L] KOG1532 GTPase XAB1, interacts with DNA repair protein XPA  ali follow..  18  44..........................................................................................................................................................................IIVVGMAGSGKTSFLHRLVNLDPAVMSLPFGAKQYNLG----DQLDYVLVDTPGQIE--FTWSASGAIITEAFASTFPTVVTYVVD-TPRSSSPITFMSNMLYACSILYTRLPLVLAFNKTDVADHKFALESDNSYTATLANSLSLSLYEFYRNIRSVGVSAISGAGMDGFFKAI...................................................................................................................................................................................................................................................................................................................................... 280
71 -12.200[E] COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family  ali follow..  13  1................................................................................................................MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQAL--STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMRAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGIVETVGVGQSETE------VARMVDCFISLQIAGGG---------DDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALH---ILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWL............................................................................................................................................................................................................................................................................................................. 278
72 -12.100[J] COG5256 Translation elongation factor EF-1alpha (GTPase)  ali follow..  13  7....................................................................................................................................................................QKPHLNLITIGHVDHGKSTLVGRLEAEQKGKATFEFATIDLAHRKFETDKYYFTLIDAPGHRD--------------NMITGTSQADAAILVISAREGEGVMEQTREHAFLARTLGVPQMVVAINKMDATSPPYSEKRYNEVKADAEKLLRSIGF---KDISFVPISGYKGDNVTKPSPNM...................................................................................................................................................................................................................................................................................................................................... 204
73 -11.900[J] KOG0052 Translation elongation factor EF-1 alpha/Tu  ali follow..  13  4....................................................................................................................................................................EKVHINIVVIGHVDSGKSTTTGHLEAQEMGKGSFKYATIDIALWKFETAKYYITIIDAPGHRD-----KNMITGTSQA------DCAVLVVACGTEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNP-KAVPFVPISGFNGDNMLEVSSNM...................................................................................................................................................................................................................................................................................................................................... 208
74 -11.800[S] KOG4273 Uncharacterized conserved protein  ali follow..  10  3......................................................................................................................................................................SRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADV-----VCISHICDEYSLPNLPNS------VALVMVFDLSELSTLVLQDWVSHTDINSFDI----LLCIGNKVDRVPHHLAHDEYRRRLLKA-SDPSRDLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEWCSENNIEFIEACASNPDFD---------------------KCLSVDGDSQGVERLFGALSAHMWPGMILKSGDRIN--------------------------EPVLPQGEEFLFDQEVVDRNSTQIRNPELSEEESEYELEYEVLSAGSGDPWDNIEERWVSASETHSHADAGGSTSQENLHVENSMVKPNKVDEELLPSGSRLELQNDTDRAIVTDEKPLGTENEKCYEFEDVEQLMSEIGNIRDNLRL--------------MPDFQRREIAANLAMKMASMFG--GDTDDEEE....................... 410
75 -11.300[J] COG3276 Selenocysteine-specific translation elongation factor  ali follow..  15  3..........................................................................................................................................................................IVTSGHVDHGKTALLKALTGTSTA------MTIDLGYAYLPLENKVLGFIDVPG------------EKFLSNMLAGLGGVHYAMLIVAADEG--VAVQTKEHLAILRQLQFHEIIVVITKADRTNSAQIESLIQTIKQDYSF----------RNANYFVTSAETGQGISELRHYLANLAELADTQ............................................................................................................................................................................................................................................................................................................................ 168
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.