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Query: [DTZ] KOG1547 Septin CDC10 and related P-loop GTPases, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERDRISALKRSFEVEEVETPNSTPPRRVQTPLLRATVASSTQKFQDLGVKNSEPSARHVDSLSQRSPKASLRRVELSGPKAAEPVSRRTELSIDISSKQVENAGAIGPSRFGLKRAEVLGHKTPEPAPRRTEITIVKPQESAHRRMEPPASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMADTPRDAGLKQAPASRNEKAPVDFGYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLNEGSSAMANGVEEKEPEAPEMLast
1 -130.000[DTZ] KOG1547 Septin CDC10 and related P-loop GTPases  ali  100  1MERDRISALKRSFEVEEVETPNSTPPRRVQTPLLRATVASSTQKFQDLGVKNSEPSARHVDSLSQRSPKASLRRVELSGPKAAEPVSRRTELSIDISSKQVENAGAIGPSRFGLKRAEVLGHKTPEPAPRRTEITIVKPQESAHRRMEPPASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMADTPRDAGLKQAPASRNEKAPVDFGYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLNEGSSAMANGVEEKEPEAPEM 568
2 -91.200[DZ] COG5019 Septin family protein  ali follow..  31  2..........................................................................................................................................................................................ASMVLADGMPTVKDDSTRSRGSDVDSFTSTDNVTQINVEAAISENKNEEKPIQDNSEQEFNPHVSIIQRQLNGYVGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKGDFGVNPEPTVMINSSAVEIVENGISLQLNVIDTPGFGDFIDNTDCWQPVLTDIEGRYDQYLELEKHNPRS-TIQDPRVHACIFFIQPTGHAISAMELRVMLALHEKVNIIPIIAKADTLTDDELNFTKEMILRDIQYHNIRIFFPPTYETDDPEAENADIMSRIPFAIIASNTFVVNNEGKRVRGRRYPWGVVEVDNEEHSDFPKLREMLIRTHLEELKEQTNK-LYEAYRTERLLSSGISQDHSVFREVNPSAKL 386
3 -89.600[DZU] KOG2655 Septin family protein (P-loop GTPase)  ali follow..  44  2......................................................................................................................................................................................................................................................ADTKGFSSIETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERIIPDAIEKQKQTVKLEASTVEIEERGVKLRLTVVDTPGFGDAIDNSNSFGAILEYIDEQYERFLRDESGLNRR-NIVDNRIHCCFYFISPFGHGLKPLDVEFMKKLHSKVNIVPVIAKADCLTKKEILRLKCRIMQEIESHGIKIYPLPDSDEDEDYKEQVKQLKEAVPFAVCGANTLLEVKGKKVRGRLYPWGVVEVENPDHCDFIKLRTMLI-THMQDLQEVTQEVHYENYRSDRLAKGIKGKENGVKAERDSSSQ. 322
4 -79.800[D] KOG3859 Septins (P-loop GTPases)  ali follow..  39  2...............................................................................................................................................................................................................................................AATDIARQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEP-----ATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDDESVA--EINGTMNAHLPFAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETY 324
5 -16.200[R] COG0218 Predicted GTPase  ali follow..  20  27.........................................................................................................................................................................................................................................................................................EIALAGRSNVGKSSFINTMLNRK------------NLARTSGKPGKTQLLNFFNIDDKMRFVDVPGYG-SKKEREKWGCMI-------EEYLTTRENLRAVVSLVDLR------------HDPSADDVQMYEFLKYYIPVIIVATKADKIPRGKWNKHESAIKKKLNFDPSDDFILFSSVSKAGMDEAWDAILEKL........................................................................................... 195
6 -14.900[R] KOG2486 Predicted GTPase  ali follow..  21  137.........................................................................................................................................................................................................................................................................................EFALVGRSNVGKSSLLNSLVRRK------------RLALTSKKPGKTQCINHFRINDKWYLVDLPGYG-----ASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDAS------------IPVKPIDLEYASWLGQNVPMTLIFTKCDKRKKKKNGGKKPEANIKEFQDLIQGF................................................................................................................. 283
7 -13.300[R] COG3596 Predicted GTPase  ali follow..  16  16......................................................................................................................................................................................................................................................................LSGLPLWVSERILQQ--EPVIGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTR--------DPLRFRLQIGEHF--MTIVDLPGVGESGV-----------RDTEYAALYREQLP----------RLDLILWLIKAD-DRALATDEHFYRQVIGE-KMLFVISQSDKAEPTSGGNILSTEQKQ--------------NISRKICLLHELFQPVHPVCAVSVRLQWGLR-------------------------VMAERMIKCLPREPSSPVVALLQHPFRTWVAREQARDD.............. 244
8 -13.200[O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis  ali follow..  12  64......................................................................................................................................................................................................................................................................LSIIGEVLSRR------HMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHITNDEKKSVKTVNQLAHALHMDKLRDDLVLVDSPGTDVTTELDS----IDKFCL----------------------DADVFVLVAN-SESTLMNTEKHFFHKVLSKPNIFILNNRWDASASEYMEDVRRQHMERCLHFLVEELKVANALEAQNRI-----------FFVSAKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFFEQHTIRAKQILATVKNIDSVNLAAEDKRHYSVEEREDQIDRLDFI 383
9 -12.100[R] COG2229 Predicted GTPase  ali follow..  16  3.......................................................................................................................................................................................................................................................................................ENKIIFTGPVGVGKTTAIAAISDEALVQTDASASDMTLDRKRNTTVAMDYGAISLDEDTKVHLYGTPG------------------QERFNFMWEI---------LSQGSMGLVLLLDNARTNPLKDLELHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAK--HNLNVPVFEIDARKEDDVKQLVSAMLFSIDP.......................................................................................... 174
10 -11.600[UR] KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins  ali follow..  12  25......................................................................................................................................................................................................................................................................VNKLQDIFAQLGSQSTIALQVAVVGSQSSGKSSVLEALVGRDFLPRGNSEIRREIEAETNRVSGENKGVSDIPIGLKISLVDLPGI--KVPVGDQPSDIEARIRTMILTYIKEPSCL--------------ILAVSPANTDLANSDLQIAGNADPDHRTIGVITKLDIMDRTDARNHLLGKTIPLRLGYVGVVNRSQEDILMNRSIKDALVAEEKFF------------------RSRPVGVPQLAK-------KLNQVLIKALLPSLKSRINNALFAT--AKEYESYGDITESRGGQGA...... 347
11 -11.500[R] COG0699 Predicted GTPases (dynamin-related)  ali follow..  11  158................................................................................................................................................................................DEESAERRRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTTVGIGAALAASILSVDSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDQDNNSAVTLSIVVIGSQSSGKSSVLEAIVGHEFLPKGS-SKIQHILTDLNMAVPSSQGVDDNPIRLTLSLIDLPGY--QIHSEDQPADLDMKISKLCEKYIREPN---------------IILAVCAADVDLANSALRASRRVDPLLRTIGVVTKMDLVPPSKAISILHNNNYPLHYGYIGVISRIVPTGRFSAGQNLTDLVSTQENSYFSTHQQFADARIGNY------GIQSLRK-------CLINVLMSKNLQHTADSIRTELEEC--NYQYKVQYNDRVLTADS........ 561
12 -10.900[TU] KOG1954 Endocytosis/signaling protein EHD1  ali follow..  13  2.................................................................................................................................................................................................................YNFFRTVPRANRNEITFYPDYEEEGQKKKKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLEFHKFHILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNAL--SVTIVDTPGI-QRIDRGYDFTGVLEWFAE---------------------RVDRIILLFDAISDEFKRC-IEALAGNEDKIRIV--LNKSDMVDHQQLMRVYGALMWSLGK....................................................................................................................... 276
13 -10.700[R] COG1159 GTPase  ali follow..  18  1.............................................................................................................................................................................................................................................................................MSTDKTYCGF---IAIVGRPNVGKSTLLNKLLGQKI-------SITSRKAQTTRHRIVGIHTEGPY---QAIYVDTPG-----------------LHMEEKRAINRLMNKAASSSIGD--VELVIFVVEGTRWT--PDDEMVLNKLRDKAPVILAVNKVDNVQEKVVDTIAGIVRKHLPE-AIHHFPEDYITDRSQRFMASEIIREKLPYSVVEIERFVTNERGGYDIN----GLILVEREGQ------KKMVIGNKGAKIKTIGIEARKD............................ 264
14 -10.500[U] KOG0090 Signal recognition particle receptor, beta subunit (small G protein superfamily)  ali follow..  15  48................................................................................................................................................................................................................................................................................RLFRRTKSNTVLLSGLSGSGKTVLFYQL----RDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHSR--------------LISKLEEYLPRAAAV--------------VFVVDALEFLPNIRAAEYLYDIKNKTPVLLCCNKTDKVTAHTKEFIRKQMEKEIDK....................................................................................................................... 200
15 -10.500[J] KOG0462 Elongation factor-type GTP-binding protein  ali follow..  18  44.........................................................................................................................................................................................................................................................................................NFGIVAHVDHGKSTLADRLLEMC-GQKQMLDKLQVERERGITVKAQTAALRHRGYL--LNLIDTPGHVD----------------------FSAE--VSRSLAVCDG----ILLLVAANQGVQAQTIANFWLAFEKNIQIIPVINKID-LPGADIKSVETQLKNLFEFNPEECLHISAKSGLNVDKVLEAIIDRVPA-SMIFDSYFDHFRGAIAHIMVKE-GSVKKGDK.......................................................... 253
16 -10.400[Z] COG5022 Myosin heavy chain  ali follow..  14  143......................................................................................................................................................................................................................................................................LYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQALIQSTDSNFHEAPQLTAVENEILATN------IMEAFGNSKTSRNDNSSR---KYIQILFDGYLLERSRLVFQPN-QERNYHIFYQILAGSSSEQLE-DKEEFKATVDALKTV-------GIDNDTCECIFSLLAALLHIGNIE---VKHSRNDAYIDSKNENLINATSLLGVDPSSLVKW-AKFLYASLFDWGVLDIYGFEHFKKNSFEQFCINYANEKLQQEFYRHVFEEYAAEGLN.................... 503
17 -10.300[R] KOG1673 Ras GTPases  ali follow..  10  100......................................................................................................................................................................................................................................................................................VSLKISLLGDCQTGKTTFVVKYVGDEN----------QSFLEMTGLNLMDKTFYVQGVTISFSIWDVGG------------------EKRSKDHI--------PIACKDAVAILFMFDLT-SRSTLNSVFYSQARKWNKTAIPILIGTKFDRLPPNLQWTIVTQARAYAKVMNASLF--------FSSATHNINVNKI--FKFILAR................................................................................... 265
18 -10.300[E] COG4917 Ethanolamine utilization protein  ali follow..  20  3.........................................................................................................................................................................................................................................................................................RIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDK----------------------GDIDTPG------------------------EYFNHPRWYHALITTLQDVDMLIYVHGANDP--ESRLPAGLLDIGVSKRQIAVISKTD-MPDADVAATRKLLLE........................................................................................................................... 117
19 -10.300[V] KOG1707 Predicted Ras related/Rac-GTP binding protein  ali follow..  15  6...............................................................................................................................................................................................................................................................................GDSSGSPKPIRIVVVGEKGSGKSSLIMAAARNTFHPN------------PSLLPYTNLPSEFFPDRIPATVIDTSS--------------------------RPEDKGKVVKEVRQADA-IVLTFAFDRPETLDRLSKYWLPLFRQLEVRVPIIYEVDNKEAYNHFSIEQITSALMKQYEVETSIQWSAQRLDQAKDVLYYAQKAVPVGPVFDQENNVLKPRCIAALKRIFLLSDHNMDGILSDEELNELLVPCEIKQMKNVMQVTFPQGVNERGLT.................... 258
20 -10.200[T] COG1217 Predicted membrane GTPase involved in stress response  ali follow..  14  7.........................................................................................................................................................................................................................................................................................NIAIIAHVDHGKTTLVDKLLKLSGTLDRKEAESERVMDSNDQEKERGITILAKNTAININIVDTPGHAD----------------------FGGE--VERVMSMVDSVL-----LVVDAQDGPMPQTRFVTQKFKAGLRPIVVVNKIDR-VIDQIFDLFDNLGATDEQLDFPIVNMDALFQAIIDHVPAPVVDTEGPFMQISQLDYNSFLGVIGIGRITR-GKVKSNT-------------------PVVAISDDGSKRNGRILKIMGHHGLQRVEVAE........ 267
21 -10.000[M] COG0481 Membrane GTPase LepA  ali follow..  16  6.........................................................................................................................................................................................................................................................................................NFSIIAHIDHGKSTLSDRLLSDREMEAQVLDSMDLERERGITIKAQSVTLNKDGETYQLNFIDTPGHVD----------------------FSYE--VSRSLAACEG----ALLVVDAGQGVEAQTLANCYTAIEMNLEVVPILNKID-LPAADPERVAEEIEDIVGIDAMEAVRCSAKTGVGIEDVLEEIVHKIPA-ALIIDSWFDNYLGVVSLVRIKN-GTLRKGDK.......................................................... 222
22 -9.760[R] KOG0395 Ras-related GTPase  ali follow..  14  3.......................................................................................................................................................................................................................................................................KTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSR-FLNGRFEDQYTPTIEDFHRKVYNI---------RGDMYQLDILDTSG--------------------------NHPFPAMRRLSILTGDVFILVFSLD------------------------------NRESFDEVKRLQKQILE------------------KSCLKNKTKEAAELPMVICGNKQVPTTEAELLVSGDENCAYFEVSAKKNTNVDEMFYVLFSM........................................... 189
23 -9.630[U] KOG0096 GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily  ali follow..  17  13........................................................................................................................................................................................................................................................................................FKLVLVGDGGTGKTTFVKRHLTGEF---------EKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAG--------------------------QEKFGGLRDGYYINAQCAIIMFDVT-SRITYKNVPHRDLVRVCENIPIVLCGNKVDV----KERKVKAKTITFHRKKNLQYYD----------ISAKSNYNFEKPFLWLARK................................................................................... 169
24 -9.540[U] KOG0097 GTPase Rab14, small G protein superfamily  ali follow..  17  1.............................................................................................................................................................................................................................................................................MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKF---------MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY--LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD................................................................................................................... 182
25 -9.530[U] KOG0098 GTPase Rab2, small G protein superfamily  ali follow..  13  1..................................................................................................................................................................................................................................................................................MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRF---------QPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSY--LLVYDITRRDTFNHLTSWLEDARQHSNSNMVIMLIGNKSDLEARREVKREEGEAFAREHGLMETSAKTAANVEEAFIDTAKEIYRKIQEGVFD................................................................................................................... 177
26 -9.450[U] KOG0087 GTPase Rab11/YPT3, small G protein superfamily  ali follow..  14  9......................................................................................................................................................................................................................................................................................YLFKTVLIGDSGVGKSNLLMRFTRNEF---------NIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAY--LIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLIETSAMDASNVEEAFQTVLTEIFRIVSNRSLE................................................................................................................... 181
27 -9.420[U] KOG0086 GTPase Rab4, small G protein superfamily  ali follow..  16  7......................................................................................................................................................................................................................................................................................FLFKFLVIGSAGTGKSCLLHQFIENKF---------KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY--LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELLETSALTGENVEEAFLKCARTILNKIDSGELD................................................................................................................... 179
28 -9.370[T] KOG4252 GTP-binding protein  ali follow..  17  8......................................................................................................................................................................................................................................................................................VAIKMVVVGNGAVGKSSMIQRYCKGIF---------TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG--------------------------QEEFDAITKAYYRGAQACVLVFSTT-DRGSFEAVSREKVVAEVGDIPTVLVQNKIDLLDDSCIK--NEEAEALAKRLRLRFYRTSVKEDLNVNEVFKYLAEKYL........................................................................................... 170
29 -9.300[R] KOG0083 GTPase Rab26/Rab37, small G protein superfamily  ali follow..  14  467......................................................................................................................................................................................................................................................................................IMGKVIMLGDSGVGKTSLLIRFRDGRY--------VPSYFLSTVGIDFRNKVVVVDGTRVKLQIWDTAG-------QERFRSVT-------HAYYRDAHAL------------LLLYDVT-NKTTYDNIRLGEIREYAQEDVVIVLIGKAD-CSGSERQVKREDGERLGREHNVPFM--------ETSAKTGLNVELS--FTAVARQLKSRGYEHGDDGKFNVHDFVRDNTKARSVCAQCRNM............................................... 666
30 -9.280[J] KOG0458 Elongation factor 1 alpha  ali follow..  14  79...............................................................................................................................................................................................KKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGIMDQTNEERERGVTVNFTIVDAPGHRDFVPNISQADMAILCVDCSTNAF---ESGFDLDGQ---TKEHMLL---------ASSLGIH---------NLIIAMNKMDNVSQQRFEEIKSKLLPYLVDIGFFEDNI-----------------NWVPISGFSGEGVYKIEYTD---EVRQWGPNLMS............................................................ 379
31 -9.070[R] KOG1489 Predicted GTP-binding protein (ODN superfamily)  ali follow..  13  341.........................................................................................................................................................................................................................................................................................DLGLIGLPNAGKSTILNKISNAK---------PKIGHWQFTTLSPTIGTVSLGFGQDVFTVADIPGIIQGASLDK--------MGLEFLRHIE--------------RSNGWVFVLDLSNNDLQLLEVGTLEKVKTKNILI-VCNKVDIDAEKSSFAKYLQVEKFSKSQEWDCVPISALREKT........................................................................................................ 499
32 -9.060[KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains  ali follow..  15  271..................................................................................................................................................................................................................................................................QLVGECRVMRQLKRLISRAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK--------------IAINCAAIPEQLLESELFGYVKGAFGASANGKTGLIQAANFLDEIGDMPLMLQAKLLRSPIQVDIRI------ISATNQNLAQF--KFREDLFYRLNVIPI-RQEDLLVHYFLHLHTRRLGSVYPGIALRKHRWPGNLRELSNLMEYLVNSTLLPPNLLNNGTTEQSDVTEVTEAHLSLDDAGGTALEEMEKQMIREAL-KKQVADELGIGIATLYRKIKKYELLNT.................. 592
33 -9.030[R] KOG0079 GTP-binding protein H-ray, small G protein superfamily  ali follow..  17  9......................................................................................................................................................................................................................................................................................HLFKLLIIGDSGVGKSSLLLRFADNTF---------SENYITTIGVDFKIRTMDINGQRVKLQIWDTAG-------QERFRTITS-------TYYRGTHGV------------VVVYDVT-NGESFGNVKLQEIENNCDSVQKVLVGNKCEENERRVVL--ESDARNYAQSMNISFFETSAKEDKNVEPMFTCITSLVL........................................................................................... 171
34 -9.030[U] KOG0093 GTPase Rab3, small G protein superfamily  ali follow..  14  21......................................................................................................................................................................................................................................................................................YMFKILIIGNSSVGKTSFLFRYADDSF---------TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAY--ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFFEASAKDNINVKQTFERLVDVICEKMSESLDT................................................................................................................... 193
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35