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Query: [P] KOG1603 Copper chaperone, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATDEMKSETKKTEHKQKQSTQIKQDLPPPTIPPLPLPYKSCTLKVSIHCEGCKRKVKKILTSIEGVFKVDIDVKQHKVTVIGIISPEILLKKLNKAGKNAEQLPEIPDPVDNKPKPVDPKEKNKKKKKEEKVQITNEATSSGIDNPEKPGSGECDKPESEKPVDEKCLSGDGGETSGPVKEEKKDVLKEKDSGKEESPSPPADSSAPAAEKKAEDTGGAVPDNGKVGKKKKKKGQSLATTNNPTDGPARTQSLPPPTATDYDRPINQINDHHITTTNNPPRHDLYPYPAQGYYAPQVMYGVSYNVAQPPVSVDAASYYTPPPPYSYAYMHNGYQPSDQNPCQPRPSDSFELFSDENPNGCAIMLast
1 -94.200[P] KOG1603 Copper chaperone  ali  100  1MATDEMKSETKKTEHKQKQSTQIKQDLPPPTIPPLPLPYKSCTLKVSIHCEGCKRKVKKILTSIEGVFKVDIDVKQHKVTVIGIISPEILLKKLNKAGKNAEQLPEIPDPVDNKPKPVDPKEKNKKKKKEEKVQITNEATSSGIDNPEKPGSGECDKPESEKPVDEKCLSGDGGETSGPVKEEKKDVLKEKDSGKEESPSPPADSSAPAAEKKAEDTGGAVPDNGKVGKKKKKKGQSLATTNNPTDGPARTQSLPPPTATDYDRPINQINDHHITTTNNPPRHDLYPYPAQGYYAPQVMYGVSYNVAQPPVSVDAASYYTPPPPYSYAYMHNGYQPSDQNPCQPRPSDSFELFSDENPNGCAIM 364
2 -15.100[P] COG2608 Copper chaperone  ali follow..  31  1.......................................MSLKLNVPIACDGCAVKITESIHVMEPDALVRVDVKEKTVTVDSKASEESIKQVIVATGYTIE...................................................................................................................................................................................................................................................................... 64
3 -13.100[OR] KOG0010 Ubiquitin-like protein  ali follow..  8  1MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMK---VTVKFAVPENSSVQQFKEEISK-----RFKSHTDQLVLIFAGKIDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNST................................................................................................................................................................................................................................... 138
4 -11.500[P] KOG4656 Copper chaperone for superoxide dismutase  ali follow..  19  5........................................KIEFAVQMRRESYAGALRSAL---DGVGQVEIDTQEGRVIIQTQRPWSEIQDKIEATGVRAVL..................................................................................................................................................................................................................................................................... 66
5 -10.400[C] COG1941 Coenzyme F420-reducing hydrogenase, gamma subunit  ali follow..  15  2..........................EATKEAKPVANKIKLGHVHFS--CTGCLVSVADIYQGLLKILDDYADLEMDVALVEGSVQDRESVEDIKETRKKSRIV.................................................................................................................................................................................................................................................................... 93
6 -10.200[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  13  72.SSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVNIPFRFRDPDLRQMFGQF-GILDVEINERGSKVTFENSADADRAREKLHGTGRKIEVNNATARVMTNKKMVTPYANG................................................................................................................................................................................................................................................. 203
7 -9.950[K] KOG4218 Nuclear hormone receptor betaFTZ-F1  ali follow..  13  1MSSN--SDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVKVSYHCESCKGFFKRTVQN-----NCQIDKTQRK------------FQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRS.................................................................................................................................................................................. 192
8 -9.870[S] KOG1043 Ca2+-binding transmembrane protein LETM1/MRS7  ali follow..  11  574...DKLEDEKRNIREMLIDPTVENSVDLKKEREVRIQDVIDSLAKLK------RERIEALLKTID-------DSD-------GIVDKQLVLEVIELLEKHASMIGTLKKEDEVAGLTEEIRKVQSGNYQMPILPTGPSSADAFNQPQGVYTASKQVPARSEQEGVEQKQQVENGPVGIPDVDTKVTSTLQQNSSKTSSSSTTKSTSDSKSA......................................................................................................................................................... 784
9 -9.160[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  10  1MAETLS--------DSGAAGPAALSSASSETGTRRLSDLRVIDLRADVR--------KRNVDS-SGNKSVLMERLKKAIEDEGG-NPDEIEITSEGNKKTSK---RSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSD.................................................................................................................................................... 198
10 -9.120[S] KOG2676 Uncharacterized conserved protein  ali follow..  9  408VNEIKITDHEGNKIEDRLLIFNRVNTNESFIRADNFPHCKLVIIEISL-----HPEIQDQIRELGGLALIVIDDNDPFILLKNNAKNQEYVKKMEKAGFEISVEKGGKVRLVSKEEDPGNENSEIISIDED......................................................................................................................................................................................................................................... 563
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.