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Query: [S] KOG1793 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDHEEESHGASPTSPASSGASSPLAPISPRSEGNAPESPSGDVQDIYKDESFEAPASPARDSSAPASPSAASPAGSRSPSPSPVKTKSKVMIDSDEDSDAEESANKRALIDSDASDAEGKKRRVMLDSDDSDHEGTSKKEPTTKNLFGDDSDDDDEDRPKKTNDLDEFVEGRDEEESQETSKPAYDSDDDDGPVDRHGRHFEWDFDKMLAEKKAERKKKTRRGGKDGGIDIINDDDGTVSRLVERMKHAAKSDRNANIERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALSEWLAPLPDKCLPALDIRITVLKLLHNPRFWKLDRSTLKQSGLGKAVMMLYKHPNETKENKGIANKLIGEWARPIYHLDTDYSTVSRQEREERDYSRMPEKRKKKINSRDEEEPNDDDQPKRPRIRDADEMGPTKSDDLKPGDKGYIPRARVPKPSTKDYVIRPEWRVTGAFKGEKKSTGNNRYDQTFRDFQERTKKSKANRIVKVSLEGRNMGILast
1 -87.900[S] KOG1793 Uncharacterized conserved protein  ali  100  1MSDHEEESHGASPTSPASSGASSPLAPISPRSEGNAPESPSGDVQDIYKDESFEAPASPARDSSAPASPSAASPAGSRSPSPSPVKTKSKVMIDSDEDSDAEESANKRALIDSDASDAEGKKRRVMLDSDDSDHEGTSKKEPTTKNLFGDDSDDDDEDRPKKTNDLDEFVEGRDEEESQETSKPAYDSDDDDGPVDRHGRHFEWDFDKMLAEKKAERKKKTRRGGKDGGIDIINDDDGTVSRLVERMKHAAKSDRNANIERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALSEWLAPLPDKCLPALDIRITVLKLLHNPRFWKLDRSTLKQSGLGKAVMMLYKHPNETKENKGIANKLIGEWARPIYHLDTDYSTVSRQEREERDYSRMPEKRKKKINSRDEEEPNDDDQPKRPRIRDADEMGPTKSDDLKPGDKGYIPRARVPKPSTKDYVIRPEWRVTGAFKGEKKSTGNNRYDQTFRDFQERTKKSKANRIVKVSLEGRNMGI 511
2 -64.500[S] COG5139 Uncharacterized conserved protein  ali follow..  16  2....................................................SEEEKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEPTIYNLPTFKKKQEPNTIEENLEVPRKVRKEQKPRRRRGKRSSTVDALNDELNELGENEEEVLTEQKQLDPTLAAKKELDLQMDAVLKPTRTKKRSNEDNLEQMADDEVLRLREQMRLAALRDAELNSEQLPATEKLKMLPLVDAVLRKTHLYDTILDNNVLDSVRMWLEPLPDRSLPALNIQRSLMDILTKLP---IQTEHLRESKIGRIVLFYTISKKPEPFIKRIADNLVSEWSRPIIKRSANYRDRAVGVASFNPEVFQTRRRRDLAAAESN----------------------------DDAQASRTGRTVIPRSIDSRYQVAPRVRLNPTAMTIAGRMKPADTEQVRKLKAKMKARSKSSKKSGVSIEGRGL.. 428
3 -15.900[R] KOG2295 C2H2 Zn-finger protein  ali follow..  8  250.DALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVA---DPLVERRW-TFMRDVNIKEICWGLNNQRLRDCEMGAI---RPANGITAHKQVVRSDIKLCAKIALN................................................................................................................................................. 624
4 -13.700[K] COG5164 Transcription elongation factor  ali follow..  12  1MSDNSDTNVSMQDHDQQFADPVVVPQSTDTKDENTSDKDTVDSGNVTTTESTERAESTSNIPPLDGEEKEAKSEPQQPEDNAETAATEQVSSSNGPATDDAQATLNTDSSEANEIVKKEEGSDERKRPREEDTKNSDGDTKDEGDNKDEDDDEDDDDDDDDEDDDDEAPTKRRRQEDIEAEVSDDEDEDEDEEDSELVREGFITHGDDEDDEASAPGARRDDRLHRQLDQDLNKTSEEDAQRLAKELRERYGRSSSKQYRAAAQVPQRFLLPSVDT----ATIWGVRCRPGIRKLLKKKFNLDRAMGKKKLKILSVIEKFCNGVP--DIYISQKLLIPVQELPLLLKPNKSDDVALEE------GSYVR----KRGIYKG................................................................................................................................... 397
5 -10.600[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  12  1MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA----------------------EHDLRGQTQEEEVRPKGRQRKLWKDEGR---------------------EHDKFREDEQAPKSRQ--------------------------ELIALY----------GYDIRSA................................................................................................................................................................................................... 247
6 -9.690[S] COG5604 Uncharacterized conserved protein  ali follow..  10  5..............................................SSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQY----------VPKVLNYHVPIQEDAKGKKFINTDSILRLLEGMTDAKNISLLLRE--AQNVLPYMITYRK----LKQFTQATVEVWSS.............................................................................................................................................. 328
7 -9.690[J] KOG2256 Predicted protein involved in nuclear export of pre-ribosomes  ali follow..  10  5..............................................SSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQY----------VPKVLNYHVPIQEDAKGKKFINTDSILRLLEGMTDAKNISLLLRE--AQNVLPYMITYRK----LKQFTQATVEVWSS.............................................................................................................................................. 328
8 -9.510[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  10  339.AGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD............................................................................................................................................................................................................................................................................................................................. 531
9 -9.460[K] KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A  ali follow..  21  1..............................................................................................................................................................................................................................................................................................MAAESALQVVEKLQARLAANP------PKKLLKYLKKLSTLPITVDILAETGVGKTVNSLRKHEH------SFARDLVAQWKKLV............................................................................................................................................ 76
10 -9.400[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  10  2..............................................TKKLALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPKRDSSKPEYQDSDTSDEEDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDRTVKDPLTGQDVRLTDEDIALIKRIVS--EYEPWIEWFTSEVEKMPIKNVPDH-KRSFLPSVSEKKRVSRMV----------HALKMGWM-------TTEEVEREKQAKRGPKFYMLWE............................................................................................................................................... 317
11 -9.150[S] KOG4610 Uncharacterized conserved protein  ali follow..  11  317.....................EFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS........................................................................................................................................................................................................................................................................................... 523
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.