current user: public
If you have questions about the server, please let us know.

Query: [A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .
# Score Template Links and tools%idFirst MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGALast
1 -93.700[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali  100  1MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA 296
2 -35.900[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  15  22............................................................................TYRTSPDSLRRVFEKYGRVGDVYIPLEPTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGRYGRRSGSPRGRHRSQSRGPSYSRSRSRSHYGGSRYSLSIYRRSRYSRSPYRRSHYRGSRYGRSPYSRSYSRHHYSRSPYRESRYRRSPYIRSSRSRSPYRRSHSKSGSHSASPSTSKSSS......... 233
3 -32.800[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  11  44............................................................................PYELTEGDIICVFSQYGEIVNINLVRDKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKT 264
4 -30.700[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  14  12..............................................................................RVTERELEDEFRSFGVIRSVWVARR----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGG-----------------------------GGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPYRARDEVPYANGNGLKDVRRSRS 196
5 -26.900[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  13  17...............................................................................QEDAELQKEVAQCDTVTRFRLSRKKTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMESISKTNHRMSTKGQVLRKKKKKVLGTPD..................................................................................................................... 117
6 -26.700[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  12  3.................................IKPTPSPPEERTIYVANF-------------------------SEEVDEELLEELFIQAGPVVKVILRDV-RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKGEIEERVRSVAAPDRDGRRDSYRDDRRSGGERGPPQYSTPQMLPHQHFVNQMMQQQINRSAPPYNGRHQNSTPHRHHDRHGYDRSSSRHHRNDDRRRSAHFLDIRKFQAPPTSWAFGNFQCFFWNLFSKITYLQEVGGA 282
7 -26.000[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  22  81............................................................................HEEAQEDEIQEKFCDYGEIKNIHLNLDRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR........................................................................................................................................ 165
8 -25.700[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  16  110............................................................................NYDTSESKLRREFEFYGPIKKIVLIHDQSGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSR 330
9 -25.200[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  13  2..............................NKRNHIRLPPEVNRLLYVRNL-------------------------PYKITSDEMYDIFGKFGAIRQIRVGN--TPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPEAP....................................................................................................................... 121
10 -25.000[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  12  10............................................................................PNRASDRDVEHFFRGYGKLSDVIM-------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSAS 280
11 -24.700[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  17  38............................................................................SFYTTEEQIHELFSRCGDVRVIVMGLDKKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGR................................................................................................................................................. 113
12 -24.400[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  18  221............................................................................SEDTREPDLMELFHPFGAVTRVYVAIDQTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR..................................................................................................................................................... 292
13 -23.400[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  13  6..........................................GNVVFVGNI-------------------------PYDVSEQQMTEIFNQVGPVKTFKLVLDPTGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQ................................................................................................................................................ 91
14 -23.300[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  22  170......................RAGARDPSSDAYRDSRERDDMCTLKIMQV-------------------------NENADENSLREELFPFAPIPRVSVVRNKTGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE.................................................................................................................................................. 274
15 -22.300[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  19  71............................................................................SPGTDEHSLKDAFSSFNGVTEARVMTNKTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP.................................................................................................................................................... 143
16 -22.000[R] KOG0226 RNA-binding proteins  ali follow..  17  213..............................................................................EVSDELLAKAFRKYPSFQKAKVVRESTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKELG................................................................................................................................... 300
17 -21.400[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  22  86............................................................................DYGATAEEIEQHFHGCGSVSRVTIQCDRSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRTNK.................................................................................................................................................... 157
18 -21.300[A] KOG1996 mRNA splicing factor  ali follow..  26  308..........................................TKVVLLRNMVGAGEVD--------------------EDLEVETKEECEKYGKVGKCVIFEGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL................................................................................................................................................ 399
19 -20.500[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  24  102.................................SENSESKSTPKRLHVSNI-------------------------PFRFRDPDLRQMFGQFGKILDVEIIFN-ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNK................................................................................................................................................ 194
20 -20.400[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  19  248..........................................NKIVVLKHIFTLEELDKTP--------------ELLIDLKDDITEEAEKCGRVTNVVLYDK---EPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEKR................................................................................................................................. 355
21 -20.400[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  9  2...........................................SRIIVKQL-------------------------PKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHFDNTCIQTSRVRVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLGINKNRENEEEDDEEQEESRAARDDSGVDADAGDEDGSGDEADEEEDTDKLAEKPISDLEYMKSLMATT 229
22 -19.900[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  12  24..............................................................................DVREKDLEDLFYKYGRIREIELKNR--HGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFR.................... 219
23 -19.400[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  13  416..............................................................................TTRATDLKNLFSKYGKVVGAKVVTNRSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQ 634
24 -19.400[A] KOG0533 RRM motif-containing protein  ali follow..  9  82............................................................................APTVISSDLEELFGDYR-LSSVSVNFNEHGDSLGTGDISLTK-RDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGPRRNNGKPEDFLRDGVHAGDIKRGGAGRGGFRKGGRGGARDAKPKKTEAELDAE..................................................................... 230
25 -19.100[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  29  334..........................................................................EEEYEDILEDIKEECTKYGVVRSVEIPRPIEGPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRR................................................................................................................................................ 414
26 -18.600[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  16  9..........................................NQSIYIQNL---------------------NERIKKEELKRSLYCLFSQFGRILDVVALKT--PKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKS.................................................................................................................................................... 91
27 -17.800[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  16  407..............................................................................EFGDQDLLQMFMPFGNVVSAKVFIDKTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK................................................................................................................................................. 480
28 -17.600[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  17  643.................................GHAPGVARKACQIFVRNL-------------------------PFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR....................................................................................................................................................... 728
29 -17.600[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  17  156..........KRNRPHICSFWVK-GECKRGEECPYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKIPPEDRNITTLYEITEPELRDQFYQFGEIRSIALVPRQ-----QCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFD....................................................................................................................................... 318
30 -17.200[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  12  682..........................................KSKVFVRNV-------------------------HFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSNDQFRK............................................................................... 831
31 -17.200[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  14  58..........................................SRVIHIRKL-------------------------PIDVTEGEVISLGLPFGKVTNLLMLKGK-----NQAFIEMNTEEAANTMVNYYTSVVLRGQPIYIQFSNHKE.................................................................................................................................................... 135
32 -17.100[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  19  307..............................................................................DSDESVLWQLFGPFGAVNNVKVIRDFTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS................................................................................................................................................. 380
33 -16.500[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  18  17..............................................................................DVTEALILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQK................................................................................................................................................. 88
34 -16.200[K] KOG2068 MOT2 transcription factor  ali follow..  11  2..........SDYGEKTCPLCAE-QICVW-PACRTPYDKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPPLNLADEDLKEYFGQYGKVLKVSMSRTAFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTK------CHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTRVQQITGATNTMQYRSGSMLPPPLDAYTSDSSTGNPIAKVPSSTSVSAPKSSPPSGSSGKSTALPAAASWGARLTNQHSLATSALS................... 321
35 -16.100[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  17  238..........................................SRILFVGNL-------------------------SFDVTDDLLRKHFQHCGDIVKIRMATFESGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSF................................................................................................................................. 338
36 -15.800[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  18  32............................................................................AWETQSETLRQHFEQYGEILEAVVIADKTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPP................................................................................................................................................ 107
37 -15.700[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  22  416............................................................................GWDTTQENLKTAFESYGEIEECSVVMDKTGRGKGYGFVMFKTRKGAREALKRPEKR-MYNRIVVCNLA........................................................................................................................................................ 483
38 -15.700[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1  ali follow..  9  10..........................................PSATIACHL--------------------DPRVFVDGLCRAKFESLFRTYDKDITFQYFKS-----FKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLH.................................................................................................................................................... 90
39 -15.700[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  28  477..............................................................................DDLEGEVTEECGKFGAVNRVIIYQEKQAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNS................................................................................................................................................ 555
40 -15.700[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  18  92..........................................VRTLFVSGL-------------------------PVDIKPRELYLLFRPFKGYEGSLI---KLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENLRLEFAKANTKMAK................................................................................................................................................ 176
41 -15.500[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  12  474..................................................................................................................EYSSAIETLVTAISLQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAG 657
42 -15.200[R] KOG0118 FOG: RRM domain  ali follow..  20  163.................................SMAQREDVIRRTVYVSDL-------------------------DQQVTEEQLAGLFVSCGQVVDCRICGD-PNSVLRFAFIEFTDEEGAMTAL-NLSGTMLGFYPVKVLPSKTAI.................................................................................................................................................... 250
43 -15.200[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  18  64..............................................................................NLDEKDLKPLFEEFGKIYELTVLKDRTGMHKGCAFLTYCERESALKAQSALHEQKTLPRPIQVKPADSESRGGSSCLRQPPSQDRK.................................................................................................................................... 153
44 -15.100[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  13  129...KVVCDENGSKGYAFVHFETQEAADK---AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERIS................................................................................................................................. 289
45 -15.000[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  17  47..................................................................................EQMRTLFGFLGKIDELRLFPPDDPVSSRVCFVKFHDPDSAVVAQ-HLTNTVFVDRALIVV-LKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPK 362
46 -14.300[S] KOG4610 Uncharacterized conserved protein  ali follow..  6  344....................................................................................................................QNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS 523
47 -14.100[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  22  255............................................................................HFNITEDMLRGIFEPFGKIDNIVLMKDSTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL.................................................................................................................................................... 327
48 -13.700[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  16  51......................................PPERGCEIFIGKL-------------------------PRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCR.................................................................................................................................................. 137
49 -13.500[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  14  35..............................................................................QLSEELLWELFVQAGPVVNVYVPKDRTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDV............................................................................................................................................... 110
50 -13.300[R] KOG4733 FOG: RRM domain  ali follow..  11  65...YIRGLPPHTTDQDLVKLCQPYGSTK-GYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDE--QELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQN....................................................................................................................................... 233
51 -13.100[R] KOG1995 Conserved Zn-finger protein  ali follow..  13  290..............................................................................DVTTDELKDLFGGIGQVGNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNMSFCNAKFMFLVSEDCLDLVSYWGFALYTHLGMTERMSVSDLIMLSLQTCECRRGGGRGGGGGGYGGGGGDRRRDNYSSGPDRNHHGGNRK......................................... 480
52 -13.000[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  9  64..................................................................................VRLRHILAQYGELGRIYLAPEFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKNIKYLTKFKWDDLTEEIAYKSAIREQKLNMVLSAAKREKDFYLSKIEKSRAMTEIDARMEKKRKIQEESGSNAEAAPVFPPRAIFQFRQKKSIENETSQSKPGLSTD.................................................. 257
53 -12.800[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  13  185.............................................................................................................................................................DGDLVAMSDSDSEEEEVTKKEKPRLTSRRRSRSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGLAPLER... 320
54 -12.600[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  16  287..............................................................................DATPEQLNETFKGFGAITKDGIVRSYRLKGNCFGFVTFASAEAVKLVLQKESAIRIGNRRVSIE------------------------------------------------------EKRGNNDNGRPAMRNGGYRNDNGYRNDGYRPRGNGSNGGRGYGRNGSERRGESRNGEAHNGDGKVHQNGTVEASR......................... 428
55 -12.500[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  12  130..TELKELFSPHGDIAECYLSGK-AFLRLDTRAHAESAKEAIDAAIRVKEL---------------------------TVSNEMLYHAFSHFGDVERAVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRDEDDGLAERMIPRTPGLSKERELGPRFPTPNSFEYVYGMKWKELYVVEQKRRAQLDEELRESRRRLESDMELAYQDYQAQMLREDLQRRQQELERLEAARRERMRGLGGPPPGMPGGVPPQ............................ 392
56 -12.100[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  10  297............................................................................PYRATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEDAVAAM-SKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTA................................................................................................................................. 385
57 -11.800[A] KOG0796 Spliceosome subunit  ali follow..  17  279.....................................................................................................................................................................................RDKLAELQEEKNKVHKERVEERRSKERSRERESSKDRDGGDNRDRGRDVDRRSRDRDRHHDHREHDRNYNQSRGYDSRSRRSSRSRSRERPRDHDRRRRHDRY............ 381
58 -11.800[R] KOG2888 Putative RNA binding protein  ali follow..  15  260..........................................................................................................................................................GRGGGQAGSRSNAYPQPNNYRNDYDERDYYAAASGSSYGRGRGGYEDYPPAPLPPQMPYGERERERDRDRDKNKDYDRHRSKHKKKHNHRQSSRSRSRSRSRSRHRSERHERKRDGGGYERSSKSRHNEHYEERERRHR... 398
59 -11.300[A] KOG4213 RNA-binding protein La  ali follow..  10  121..............................................................................DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQGKKTKFASDDEHDEHDENGATGPVKRAREETDKEEPASKQQKTENGAGDQ........ 408
60 -11.200[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  18  871..........................................GTVLSCNGF-------------------------PKDVTLEDVVEFFNDY-EPDSIRIRRGDDGVMTGECMLACQNQENARRASMDLDGQKLRNSVISV........................................................................................................................................................... 945
61 -11.000[R] KOG2891 Surface glycoprotein  ali follow..  11  176....................................................................................FKRIFEKFGRVRMVDI-KSMQADINGMGYVQFEEYSSFVRAMDEFRGNKLVDKTQAINICVSFDKQKHLSDSNIQRR-ERIRKKFIAKAKAEDEEREKLKKQQEEELDRERQKQEELKKAEAEKQREREERRKEKHMKKIQERGQVEISQKIRIEERKLMIAQRKLESIRTLEKLFERIQLKQRDKNRRVKQDDDKDIQRGRLVEKYKAATE 408
62 -11.000[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  20  393............................................................................PYEATVQHIVTFLGDFATMVKVHMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSKRYIEVFQASAEE.................................................................................................................................................... 471
63 -10.900[R] KOG2135 Proteins containing the RNA recognition motif  ali follow..  7  381..................................................................................AKLNEHFATFGTVDNIQVRYNGEIDS---ALVTYASKFDAGKAYKSPT-PVLNNRFIKVFWHNPGGEGSENATGKPSSPTSPPKPVEKPKIATVQESKFVSVAAQNYRKQIQDAKERLTKEKSILSTLVQAQNQHNIILDKWMVKQKELLIKARTSTDETDKKNATKLVKHLHKKIKACKEEVDGILLKISEKSMVVDEIAAQIEELKNPQKSD 590
64 -10.800[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  5  406...........................................................................................................................................................................KEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDS 530
65 -10.800[A] KOG2217 U4/U6.U5 snRNP associated protein  ali follow..  12  56..........................................................................................................................................................KEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREEREREREKERIREREKERLRERERERERERVRELTAPPP 197
66 -10.600[R] KOG4520 Predicted coiled-coil protein  ali follow..  9  142..............................................................................................................................................................................KLGLSVFTHHRVESGGPGTSAASARRKPRAEDQTESSCESHRKSKKEKKKKKKRKHKKEKKKKDKEHRRPAEATSSPTSPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSEA 263
67 -10.300[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  12  61...................................................................................................................................................................QARLAETEQAIHRLNEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSR 193
68 -10.300[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)  ali follow..  14  47.................................DQSEFDTGFGNIIVVDHL-------------------PVVPKEKFEKLEGVVKKIYNQLGVIKENGLVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHI............................................................................................................................................................. 136
69 -10.300[K] COG5175 Transcriptional repressor  ali follow..  12  16ALSNFDTSFLSEDEEDYCPFF-PCGICQF--ACRRKYDDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRYEEVAPTFGQYGKINKIVVNRKTPHSNNT-VYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTK------CSSYLRGLPCPNPNCMFLHEPGEEADSFNKRELHNKQQAQQQSGGTAFTRSGIHNNISTSTAGSNTNLLSENFTGTPSPAAMRAQLHHDSHTNAGTPVLTPAPVPAGSNPWGVTQSATPVTSINLSKNSSSINLPTLNDSLGH 377
70 -9.920[R] COG5084 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins  ali follow..  20  284..........YSENAPICFEFAKYGFCELGTSCKNQHILTDYAMF........................................................................................................................................................................................................................................................... 320
71 -9.900[S] COG5291 Predicted membrane protein  ali follow..  8  214..................................................................................................................................................................HPSSCCKARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESEC 347
72 -9.640[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  15  199..SELSALFEPSRGFVMISYYDIRAAHA-----RALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDT----TVSNDELLQLFGAYGEIREIRE----TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRL................................................................................................................................................ 349
73 -9.560[T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain  ali follow..  11  32..........................................................................................................................................................ERLSPEVAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQ 173
74 -9.500[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  10  828........................................................................................................................................................................ESLEEQGMKNSEEIERKVAIHRKRLEADGLSGNQRVLPEKREKREDSRDSSRKRNRSESQNRSQSPPQKSLTRERVRDHDLDKDRHRDRDRQQHDLDKDRKRRAKSSSRERDDHDRSRERDRDWRRRG 955
75 -9.410[O] KOG0415 Predicted peptidyl prolyl cis-trans isomerase  ali follow..  15  250...............................................................................TTDEDLEIIFSRFGKINNCEIVRDRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFSQSVSQNYKYKPKSQQQEAPKRRQSPQRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPARRRR...................................................................................... 381
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;