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Query: [R] KOG2203 GTP-binding protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGENDDGCSTQLIDGNGEFNVKGLDNFVKKTKLSDCGLSYAVVAIMGPQSSGKSTLLNHLFKTSFREMDAFAGRSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAVADIVLINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEFFNVMIVALSSYEEKEKQFEQEVAELRQRFFHSISPGGLAGDRRGVVPASGFSFSSQQIWKVIKENRDLDLPAHKVMVATVRCEEIANEKLRDLATNESWLELHEAAEGGLVPGFGKKLSSILEKYFSEYDAEAIYFDEGVRKEKRLQLKLNALDFVYPSYATMLGHLRSNALESFKIRLEQSLNQGEGFAKAVRDSQQSCLMVFDKGCEDAAVKQATWDASKIREKLCRDIDAHTFFARSAKLSELTANYEKRLTQALSEPVESLFEAGGKETWPSIRKLLKRETETAVTDFLDVVTGFELDHAKIDAMVQNLKNYSQSLVEKKAREEAAKILIRMKDRFSTVFSHDKDSMPRVWTGKEDIRAITKDARAEALSLLSVMTAIRLDERPDNIESTLFSSLMDGTVSAASSHNRSVGTSTDPLASSSWEEVPPNNILLTPVQCKSLWRQFKSETEYTVTQAISAQEAHKRNNNWLPPAWAIVLMIVLGFNEFMMLLKNPLYLLGFFVAFLLSKALWVQLDIPREFQHGAVAGVLSITSKFLPTVMNLLRKLAEEAQGKTTQEVPDLSASQTYRQQSPSHSISSTISESVASNISSAGDDAEYSSPSPALVRRRNTNNVQESEISQMLast
1 -187.000[R] KOG2203 GTP-binding protein  ali  100  1MGENDDGCSTQLIDGNGEFNVKGLDNFVKKTKLSDCGLSYAVVAIMGPQSSGKSTLLNHLFKTSFREMDAFAGRSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAVADIVLINMWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEFFNVMIVALSSYEEKEKQFEQEVAELRQRFFHSISPGGLAGDRRGVVPASGFSFSSQQIWKVIKENRDLDLPAHKVMVATVRCEEIANEKLRDLATNESWLELHEAAEGGLVPGFGKKLSSILEKYFSEYDAEAIYFDEGVRKEKRLQLKLNALDFVYPSYATMLGHLRSNALESFKIRLEQSLNQGEGFAKAVRDSQQSCLMVFDKGCEDAAVKQATWDASKIREKLCRDIDAHTFFARSAKLSELTANYEKRLTQALSEPVESLFEAGGKETWPSIRKLLKRETETAVTDFLDVVTGFELDHAKIDAMVQNLKNYSQSLVEKKAREEAAKILIRMKDRFSTVFSHDKDSMPRVWTGKEDIRAITKDARAEALSLLSVMTAIRLDERPDNIESTLFSSLMDGTVSAASSHNRSVGTSTDPLASSSWEEVPPNNILLTPVQCKSLWRQFKSETEYTVTQAISAQEAHKRNNNWLPPAWAIVLMIVLGFNEFMMLLKNPLYLLGFFVAFLLSKALWVQLDIPREFQHGAVAGVLSITSKFLPTVMNLLRKLAEEAQGKTTQEVPDLSASQTYRQQSPSHSISSTISESVASNISSAGDDAEYSSPSPALVRRRNTNNVQESEISQM 834
2 -35.300[R] KOG2037 Guanylate-binding protein  ali follow..  11  2APEINLPGPMSLIDNTKVVNPEALKIL------SAITQPVVVVAIVGLYRTGKSYLMNKLAGKKFSL---GSTVKSHTKGIWMWCVPPEHTLVLLDTEGLGDIEK---GDNENDSWIFALAILLSSTFVYNS----MGTINQQAMDQLHYVTELTDRIKANSSPAFVWTLRDFTLELEVDGEPITADDYLELSLKLRKKKSKSFNDPRLCIRKFFPKRKCFVFDWPAPKKYLAHLEQLKEEELNPDFIEQVAEIAVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVEKAIAHYEQQMGQKVQLPTET---LQELLDLHRDSEREAIEVFMKNSFKDVDQMFQRKLGAQLEARRDDFCKQNSKASSDCCMALLQDIFGPLEEDVKQGQKLQELKNKYYQVPRKGIQAKEVLKKYLESKEDVADALLQTDQSLSEKEKAIEVERIKAESAEAAKKMLEEIQKKNEEMMEQKEKSYQEHVKQLTEKMERDRAQLMAEQEKTLALKLQEQERLLKEGFENESKRLQKDIWDIQMRSKSLEPIC............................................................................................................................................................................................................................................................................................. 588
3 -16.400[O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis  ali follow..  10  47..........RIATEDDLVEMQGYKDKLSIIGEVLSRRHMKVA-FFGRTSSGKSSVINAMLWDKV------SGIGHITNCF----CALLRDDLVLVDSPGTDVTTELDSKFCLDADVFVLVANSESTL------------MNTEKHFFHKVNE------WLSKPNIFILNNDASASEPEYMEDVRRQHMERCLHFLVEELKVANALEAQIFFVS--------------AKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFEECISQSA-----KTKFEQHTIRAKQILATVKNIMDSVNLAAEDKRHYSVEEREDQIDRLDFIRNQM----------------NLLTLDVKKKIKEVTEEV-ANKVSCAMTDEICRLSVLVDEFCSEFHPNPDVLKIYKSELNKHIEDGMGRNLADRCTDEVNALVLQTQQEIIENLKPLLPAGIQDKLHTLIPCKKFDLSYNLN......................................................................................................................................................................................................................................................................................................................................................................... 508
4 -15.500[R] COG3596 Predicted GTPase  ali follow..  17  40.........................................VIGIMGKTGAGKSSLCNALFAGEVSPVSDVAA---CTRDPLRFRLQIGEHFMTIVDLPGVGESGVRDTEYA---ALYREQLPRLDLILWLIKADD--RALATDEHFYRQVIG------EAYRHKMLFVISQSDKAEPTSGGNILSTEQKQNISRKICLLHELFQPVHPVCAV----------------------------------------SVRLQWGLRVMAERMIKCLPREPSSPVVALRTWVAREQARDDFGETVDTILDTVSTFPLIPAPVRTIIQAVRSSVVSVARAVWDFF............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 288
5 -13.900[R] COG1159 GTPase  ali follow..  14  1................................MSTDKTYCGFIAIVGRPNVGKSTLLNKLLGQKISIT---SRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLM-NKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDG-----------KAPVILAVNKVDNVQEKVDLLPHLQFLASQFLDIVPISAETGMNVDTIAGIVRKHLPE-----------------------AIHHFPEDYITDRSQRFMAS------EIIREKLMRFLGAELPYSVTVEIERFVTNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 267
6 -13.000[R] COG1084 Predicted GTPase  ali follow..  20  165..........................................VVIAGFPNVGKSTLLRTLTGAEPEVAD-------TTKGIQIGHLERKWKRIQVIDTPGL--LDRPVEDMNNIELQAMVALEIADVIMF------IFDASETCGYTLESQYSLYLGIRSVFDIPVVTVFNKMDLAENVKY----LEEYINMVEDPLKVSAFEGRGVSKIIK.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 319
7 -12.500[R] COG0699 Predicted GTPases (dynamin-related)  ali follow..  9  245.........IEIRNI------------LQDIQDNNSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFL-----KGSNMVTR-LTLVHSADTAIPY-ITDFSKIDLNMAVPSSQGVDDNPIRLTIYIPNLSLIDL-QIHSEDQPADLDMKISKLCEKYIR-----EPNIILAV-DLANSAALRASRRVDPLGLRTIGVVTKMDLVPPSKAISILHNNNYPLH---------------VISRIVPTGRFSAGQNLTDLVSTQENSYFSTHQQFADARIGNYLGIQSLRKCLINVLEYTMSKN----------------------LQHTADSIRTELEECNYQYKVTADSYIAEGLDIFKAAFKEFTQKFGKSEVRDLLKSSLNEKVMDLLAERYWTDDDISNWSKHTNALDEHWKYKLDSCVSTLTRMGLG-STLLVTDSISKCIDEITKASPFADHPAA--------MQYIMNAAQDILRRRFHATSEQVENCVKPYKYDVEVNDDEWKSSRGQAEKLLQRELGLCQSALEKIKNAVGSRRMNQVLQYLEE.............................................................................................................................................................................................................................................................................................. 757
8 -12.500[R] KOG1490 GTP-binding protein CRFG/NOG1 (ODN superfamily)  ali follow..  12  171..........................................VLICGYPNVGKSSFMNKVTRADVDVQP-------TTKSLFVGHTDYKYLRYQVIDTPGI--LDRPFEDRNIIEMCSITALALRAAVLF---FLDISGSCGYTIAQQAALFHSIKSLFM--NKPLVIVCNKTDLMPMENISEEDRKLIEEM-QVLLKMSTLTDEGVMSVKNAACERLLDQRVEAKMKSKKINDHLNRFHVAIPKPRDSIERLPCIPQVVLEAKAKEAAAMEKRKTEKDLEEENGGAGVYSAS-LKKNYILQHDEWKEDIMPEILDGHNVADFIDPDILQRLAELEREEGIREAGVEEADMEMDIEKLSDEQLKQLSEIRKKKAILIKNHRLKK------TVAQNRSTVPRKFDKDKKYTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSEDAGNDAMDVDDEQQSNKKQRVR------------------SKSRAMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARREADRVIPTLRPKH............................................................................................................................................................................................................................................................................................ 657
9 -11.600[R] COG1160 Predicted GTPases  ali follow..  14  1.....................................MATPVVALVGRPNVGKSTLFNRLTRTRDALVADFPG---LTRDRKYGHAHIAGYDFIVIDTGGIDGTEEGVEEKMAEQ--SLLAIDEADIVLFLV---------DARAGLTAADIGIANYLRQRQNKITVVVANKTDGIDADSHCAEFYQ-----LGEIEQIAASQGRGVTQLME--------------QVLAPFAEKMENADENDRTSEEEQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGE----------DRVVVFDMPGTTRDSIYIPME-RDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQ--DANVVLLTIDARENISDQDLSLLGFILNAGRSLV---------IVVNKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGSNPFAGRKNKLTPNQLRKRKRLMKFIKKAKR.............................................................................................................................................................................................................................................................. 504
10 -11.400[E] COG4917 Ethanolamine utilization protein  ali follow..  13  1.......................................MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKG---------------DIDTPGEYFNHPR-------YHALITTLQDVDMLIYVHGAND------------ESRLPAGLLDIGVSKRQIAVISKDMPDADVAATRKLLLE------EPMFELNSHDPQSVQQLVDY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 141
11 -11.200[UR] KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins  ali follow..  10  22.........IPIVNK--------LQDIFAQLGSQS--IALPQVAVVGSQSSGKSSVLEALVGRDF------RGNDICTR-LQLVQTKPSSDGGSDEDFSEIRREIESGENKGVSDIPIGLKIFVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKEPSCLILAVSTDLANSDALQIAGNADPDGHRTIGVITKLD--RGTDARNHLLGKTIPLRYVGVVNRSQEDILMNRSIKDALVAEEKFFRSRPVYSGLTDGVPQLAKKLNQVLVQHIKALLPSLKS-----RINNALFATAKEY-ESYGDITESRGGQGALLLSFITKYCEAYSSTLEGKSKEMSTSELSGGARILYIFQSVFVKSLEEV--DPCEDLTADDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQCA------------RFIFDELVKISHQCMMKELQRF-----PVLQKRMDEVIGNFLREGLEPSQAMIRDLIEMEMDYINTSHPNFIGGTKAVEQAMQTVKSS------RIPHPVARPRDTVEPERTASSGSQIKTRSFLGRQANGIITDQAFPTAADAERPAPAGNGSTSWSGFSSIFRGSDGQAAAKNNLLNKPFSETTQEVYQNLSTIYLKEPPTILKSSET--HSEQESVEIEITKLLLKSYYDIVRKNVEDL-------VPKAIMHFLV----NYTKRELHNVF--------------------------------IEKLYRE------NLIEELLKEPDELAIKRKRTQETLRILQQANRTLDELPLEAESVERGYKIGSEAKHEELPGT----RRSRTETNGNGRLHM 782
12 -11.200[R] KOG2486 Predicted GTPase  ali follow..  13  138..........................................FALVGRSNVGKSSLLNSLVRRKLALTSKKPGKTQCINHFRI------NDKWYLVDLPGYGASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYASWLGQNQVP--------MTLIFTKCDKRKKKKNGGKKPEANIKEFQDLIQ-SSVTNQGRDEILLHMAQLRNYWLKH.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 318
13 -10.500[TU] KOG1954 Endocytosis/signaling protein EHD1  ali follow..  12  94.........................................MILLVGQYSTGKTTFIRYLLESDFPGIRIGPEEEGSIPGNALVVDAKKQESVTIVDTPGILSGEKQRIDRGYDTGVLEWFAERVDRIILLFDAHKLD---------ISDEFKRCIEALAGNEDKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 282
14 -10.300[R] KOG1673 Ras GTPases  ali follow..  10  104..........................................ISLLGDCQTGKTTFVVKYVGDENQSFLEMTGLNLMDKTFYVQGVTIS---FSIWDVGGDEKRSKDHIPIACKDAVA--ILFMFDLT-VFGWYSQARKWNKTAIPILQWTIVTQARAYAKVMNASLFFSSATHNINVNKIFKFILARLFNLPWKIDRNLTLGEPIID.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 285
15 -9.730[U] KOG0090 Signal recognition particle receptor, beta subunit (small G protein superfamily)  ali follow..  12  58..........................................VLLSGLSGSGKTVLFYQLRDGSSAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHSRLISKLEEYLPRAAAVVFVVDALEF-------------LPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTDKVTAHTKEFIRKQMEKEIDKLRVSRSAISTADIA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 214
16 -9.690[V] KOG1707 Predicted Ras related/Rac-GTP binding protein  ali follow..  10  1..........................MWMGVGDSSGSPKPIRIVVVGEKGSGKSSLIMAAARNTFHPNIPSLLPYTNLP----SEFFPDRIPATVIDTSSRPEDKGKVVKEVRQADAIVLTFAFDR--LSKYWLPLFRQLEVRVPIIVEVDNKEAYNHFSIEQITSALMKQYREVETSIQWSAQRLDQAKDVLYYAQKAVIDPVGPVFDLSDEELNELQKKCFDTPLVPCEIKQMKNVMQVTFPQGV----NERGLTLDGFLFLIQTLWTMLRKSNDLRLGDDLVPYSSFKRQADQSVELTNVAIEFLREVYEFFDSNGDNNLEPHEMGYLFETA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 348
17 -9.610[H] COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein  ali follow..  16  1.......................................MNIFGITGWKNSGKTTLTEKLV------------AELVRRGWKVSTVKHAHHDF--IDKPGADSMHELRGEDEPPLESILSRLAPCDIVLVE------GYKRESHRKIETRRLEAKDRTPLSAGDPNIVAIAADFAVTDKSLPAFDLDDVKSIVDFIER............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 161
18 -9.490[P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component  ali follow..  16  18.........IELKDVQISFRLADGGRFDAVAESNLAVAENEFVAIVGPTGCGKSTLLNAVAGLLTPASGTVEISGQRLQG-WKTVL---ENVAIGLEIAGTPKAKAREQAREWLNKVGL--VGLAQVLIRNLMDEPFGPLDAQTRVIMG---DLLLDLWSQDKKAVMFVTHDLEEA---------------LADRVVIMSAGPRARIMAEYRIPLAR-------------------------------PREISEIRLDNQFHEIHREIWSALKEEVLKGYQQTSGERS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 281
19 -9.420[U] KOG0077 Vesicle coat complex COPII, GTPase subunit SAR1  ali follow..  18  5.....................DWFYGILASLGLWQKEAK---ILFLGLDNAGKTTLLHML-------KDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD-------KERFAESKRELDALLSD---------EALATVPFLILGNKIDIPYAASEDELRYHL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 146
20 -9.380[DZ] COG5019 Septin family protein  ali follow..  14  73...............NGYVGFASLPNQWHRRCVRQ-GFNFNVL-VLGESGSGKSTLVNTLLNRDVSLTGDFGVNPEPTVMINSSAVEIVEN-LNVIDTPGFGDFIDNTDDQYLELEKHNPRSTIQDIFFIQPTGHAISAMELRVMLALHEKVNII-----------IIAKADLTDDELNFTKEMILRDIQY--------------------NIRIFFPPTYETDDPESVAENADIMSRIP--ASNTFVVNNEGKRVRGRRYP------WGVVENEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQEK-----------------EDRLKQSENELRTRHREMKAALEKQKADLIDHKNRLMQAKAAAENEKSKRKFFK.................................................................................................................................................................................................................................................................................................................................................................................................................. 469
21 -9.360[P] COG0370 Fe2+ transport system protein B  ali follow..  16  6..........................................YCILGNPNTGKTSLFNALTGSYEYVGN---------SGVTVEKKVGRSKTGKLIDLPGIYDLNPISRDETVVTRFLL-----FDCMLNIVDSSQIERNLNLTVQLLEY------------GAPVVMGLNMIDVAAGRGIHLNIQNLAKKLRIPILPVVARSGKGTEDILS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 155
22 -9.350[F] COG1618 Predicted nucleotide kinase  ali follow..  14  1..............................MRIEGKEKTMLRIAVTGSPGVGKSTVVAKTAEK-------AEKPGFKIGGI-RTAEIRKEGHREGFSIRDLATGKTGLDDLERIGANAVRNALACDLVVID----EIGPMELISQSFVSAVEEVL-----ESDKPVLAVLHTVDKGNRDELPEKITNRFLRKLG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 184
23 -9.290[J] KOG1191 Mitochondrial GTPase  ali follow..  14  337.......................VESALDTANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAG---TTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER--SETAAKVADVIIM--------------------AVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGGLLYLKQPMILVMNKIDCAPPGSCDQLEDQ-VFTSAVTGQGIEELEDAILEILGLDRVPTGGHQWTVNQRQCEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 599
24 -9.250[P] COG4525 ABC-type taurine transport system, ATPase component  ali follow..  13  1...........MLNVSGLWAEYQGKPALQDVSLQIASGQL--VVVLGPSGCGKTTLLNLIAGFMTPSAGVITLDNIPVSG-WRDVV---SNVEFGLQLAGMSKEQRRVTALKMLNRVGL--VGIARALAVDLLDEPFGALDAFTREQMQ---ELLLTIWRDTGKQILLITHDIEEA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 192
25 -9.220[S] COG3523 Uncharacterized protein conserved in bacteria  ali follow..  7  193............................................VVGSPGDGKTTALLN--GLQFPLAEQMEQTSRITLHCWFT------NEAVLIDTAGGEASAAQRNAGEWQGFLGLLR-PLNGVILTDLTAQSPAERLAACAALRARLAELRETLGIRFPVYLVVTKMDLLPGFSEYFRTLTSHLRAQIWGFTLPYSRRRKAGDPQALHAAC---------AQELARLTLRLDQGLDTRLQEEYDLKSRQRLYEFAALGEPLLEAIEQIFLDSKFDTSAAQAQADAVADQLSIWQRFVRAIKTARGESSASLPHALPDGNRSYFLHDLLTQFIFREAHLVEPNLQWAWRYRLLRLGGHLLVLVLAFLLWQG-QTNGDYLNEISARATRLDGDVKAYTGKPAMAPVPALLDSARELSAWPELDPDAPPLAWRYGLYSV-PPVTDSVASLYNRLLDQLLLPPLVKRMEYVLADAIARQDS--------------KAAYDALRIYLLLNLDKDHEDKYNAAEIQSWVINDLGNSDSVAGFGGRAAVLTHIEALFDGSRVVHSPYEKDEALIRQARAFLDGHTST--RIYARALAAMESEAPQEFTLVRAVGADAGTVFVRSNGAPLDDKRLPEFVAAATANDGWVMGRESTPKKLTDSLRSQIPGQEQSVAREVRRL-----------YLTEYARRWQDFLDSIH-----------------SINSAGEEGSSGLAYDLQVLRTLASPDSPLMRLGKAVVEQTTLVPPPDPQARQKQLAQRASGNAGKVVQTAKLFQDIHPEERLEKTLVDDRFAALREVIAGRTDGGQSGGGT 985
26 -9.150[R] COG2229 Predicted GTPase  ali follow..  16  2.....................................RENKII-FTGPVGVGKTTAIAAISDEALVQTDASASKRNTTVAMDYGAISLDEDTKVHL---GTPGQER------FNFMWEILSQGSMGLVLL---------LDNARTNPLKDLEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAKHNLNVPEIDARKEDDVKQLVSAMLFSI........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 172
27 -9.130[R] KOG0075 GTP-binding ADP-ribosylation factor-like protein  ali follow..  18  5.......................INRILEWFKSIFWKEEMELT-LVGLQFSGKTTFVNVI------ASGQFAEDMIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAAD-------LDKLEASRNELHSLLDK---------PQLAGIPVLVLGNKRDLPGALDETGLIERMN.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 148
28 -9.120[R] COG1341 Predicted GTPase or GTP-binding protein  ali follow..  13  1...........MMRMASNKAMFTNDDRLLAVEKIESLRKPAKVMIIGDVDTGKTTLANELLGFRVAIIDSDIGQKGILPPATISLAFVDSHFTSLDDLKAFSHYFIGTIT---NQYFGEMVVGVMKLVLID----TTGMIYGSGVELKRMKIEAV-------KPNLILALER--NNELAPILKGYEDITIRL-FSRSERRELRREKWRKYFE.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 212
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.