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Query: [K] KOG2239 Transcription factor containing NAC and TS-N domains, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKAAQMATAAEKLKTAAEKSKTAADNVVAKEKPAEEASPSPSGSGKKGKPKATQKPNVAKALQKEISSSEDALDVKNKPPAGFSGAKGKPHIMGQMDPAYRNKIKKLMSLAKQLPPNVFSLPNSQKEEGASAAKSCVVEDDQSTDSDDAPDLVEADPKETQPDEQGQLGTVAVRTREVSKQSRGERKARRILMKLDLKPMENVARVTMKKGKNILLYIDQPDVYRVAHSSTYIFFGEICVEDTSTTSVASQAAVKAAERFRGTSPAGRQGNEDGKAPGEESPHDDDDDENDGEDADAMGLHAKDIELVQMQAACSRKKAIQALLKNDNDVVNAIMALTVGLast
1 -92.300[K] KOG2239 Transcription factor containing NAC and TS-N domains  ali  100  1MKKAAQMATAAEKLKTAAEKSKTAADNVVAKEKPAEEASPSPSGSGKKGKPKATQKPNVAKALQKEISSSEDALDVKNKPPAGFSGAKGKPHIMGQMDPAYRNKIKKLMSLAKQLPPNVFSLPNSQKEEGASAAKSCVVEDDQSTDSDDAPDLVEADPKETQPDEQGQLGTVAVRTREVSKQSRGERKARRILMKLDLKPMENVARVTMKKGKNILLYIDQPDVYRVAHSSTYIFFGEICVEDTSTTSVASQAAVKAAERFRGTSPAGRQGNEDGKAPGEESPHDDDDDENDGEDADAMGLHAKDIELVQMQAACSRKKAIQALLKNDNDVVNAIMALTVG 341
2 -37.200[K] COG1308 Transcription factor homologous to NACalpha-BTF3  ali follow..  27  5......................................................................................................................................................................................RMNSREMRRLMAQMGIKEMDDVTKVIFKKTKDYVIDNAQVTMIEAQGVKTFQVVGTMREVP-----------------------------------------------KEPEEKKEESFPEDDIKLVMEQASVSREKAIEALKASGGEPAQAIMNLM.. 117
3 -14.600[R] KOG3450 Huntingtin interacting protein HYPK  ali follow..  22  64..........................................................................................................................................................................................................................................................................................SREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALT.. 120
4 -12.500[K] KOG2240 RNA polymerase II general transcription factor BTF3 and related proteins  ali follow..  12  33......................................................................................................................................................................................TADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITE--------------------SQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVDLVENFDEASKNEA..................... 157
5 -11.700[TZ] KOG3671 Actin regulatory protein (Wiskott-Aldrich syndrome protein)  ali follow..  9  352.SWNQTPVRQYKPSFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPASVLAKLPPAQDGRSNLLAEIQAGKQLRSVQQTADSPKSAGGDARGD--MAQIRQGAQLKHVDAAAEQERRKSTT----------------------GAAGMGGLAGALAKALEERRMN-------------------GIDDTSDDDDDEDDKNECPSSTILDLKNYRIVNFQDKLSYILKVTNL................. 634
6 -11.600[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  8  762.SADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRPPPPPPPQ.................................................................................................................................................. 955
7 -10.100[S] KOG2632 Rhomboid family proteins  ali follow..  11  314....................................................................................................................................................................................................................................................PTAPAGETDPNLHARLLEDSSSPDRLSDATVNTVADSRQAPIANAAVLPQSQGRVAASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAV-EILMS 408
8 -9.100[R] KOG2295 C2H2 Zn-finger protein  ali follow..  8  263LEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTY-----------------------------------------------------EEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLSITRSEIEAVCNRFSG-----YLRVAIA 547
9 -8.880[S] KOG4463 Uncharacterized conserved protein  ali follow..  24  273....................................................................................................................................................................................................................................................TAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIMQTSRAQAIQALSQT-NDVQRAVELL... 365
10 -8.280[P] KOG3574 Acetyl-CoA transporter  ali follow..  8  2....................................................................................................................SPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGDFLKAPQSFRAELSSILLLLFLYVLQLAGSIPLILQSKNAFFSFVFWPFSLKAPLVDAVYVFGRRKSWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALTVAFFLFEFLAATQDIAVDGWALT------MLSRENVGYASTCNSVGQTAGYFLGNVLFLAL. 235
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.