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Query: [R] KOG2295 C2H2 Zn-finger protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGDSDDEYDRKRRDKFRGERESYRTERRDDRRPVGGSAGARDEWAERNPFRGGASAGGGGARHRPDYSDYRGPGARPRYGSPVRDLPPAKRMRPDWGDGDVRANPRFGGYDPYLMQAWNDHYQSMHSAYSHGGHAPPVRESIGGGGGDTLTQPAMLNLKQFLDTQDENISDSEVMRKYTEYKTDFKRQQLNEFFVAHKDEEWFKNKYHPEDSVKRSEEQRGFLQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAIADPLVERRWYRRGWITFMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCAKIALNLDEKFRLWAEGPKDDSNSARANESSENGSGSTYGFNSQNPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERDEQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPPPVRVTNNDVQEYIKIYESKLQQFLTKTVPLSDEEIKNLGAKDAETEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKEVQYFNNYLRDPKRPQLPEHPGTSKRPESESARGGGGGYRPPMYPPFSAMPYGFGPPMMGGGRGGRNFPPARRPGGFDYRPRSHYRDLDAPQEPYLast
1 -184.000[R] KOG2295 C2H2 Zn-finger protein  ali  100  1MGDSDDEYDRKRRDKFRGERESYRTERRDDRRPVGGSAGARDEWAERNPFRGGASAGGGGARHRPDYSDYRGPGARPRYGSPVRDLPPAKRMRPDWGDGDVRANPRFGGYDPYLMQAWNDHYQSMHSAYSHGGHAPPVRESIGGGGGDTLTQPAMLNLKQFLDTQDENISDSEVMRKYTEYKTDFKRQQLNEFFVAHKDEEWFKNKYHPEDSVKRSEEQRGFLQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAIADPLVERRWYRRGWITFMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCAKIALNLDEKFRLWAEGPKDDSNSARANESSENGSGSTYGFNSQNPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERDEQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPPPVRVTNNDVQEYIKIYESKLQQFLTKTVPLSDEEIKNLGAKDAETEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKEVQYFNNYLRDPKRPQLPEHPGTSKRPESESARGGGGGYRPPMYPPFSAMPYGFGPPMMGGGRGGRNFPPARRPGGFDYRPRSHYRDLDAPQEPY 939
2 -23.300[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  35................................................................................................................................................................................RVIDLRADVRKRNVKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKN.......................................................................................................................................................................................................................................................................................................................................................... 484
3 -20.900[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  2....................................................................................................................................................................................................................................................................................................................................................................................................................EKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIINERGSKGF---GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNK.................................................................................................................................................................................................................................................................................................................................................... 194
4 -19.300[K] COG5164 Transcription elongation factor  ali follow..  2.....................................................................................................................................................................................................................................................SDNSDTNVSMQDHDQQFADPVVVPQSTDTKDENTSDKDTVDSGNVTTTESTERAESTSNIPPLDGEEKEAKSEPQQPEDNAETAATEQVSSSNGPATDDAQATLNTDSSEANEIVKKEEGSDERKRPREEDTKNSDGDTKDEGDNKDEDDDEDDDDDDDDEDDDDEAPTKRRRQEDIEAEVSDDEDEDEDEEDSELVREGFITHGDDEDDEASAPGARRDDRLHRQLDQDLNKTSEEDAQRGRSSSKQYRAAAQDGYVPQRFLLPSVDTATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIF-TGRIYIEKQSVIEKFCNGVPDIPVQELPLLLKPNKSDDVALEEGSYVRIKRGIYKGDLAMVDKIVPRLD......................................................................................................................................................................................................................................................................................................................... 421
5 -17.600[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  3..............................................................................................................................................................RIIVKQLPKHITEDKLRQIFGAQ----PDGKFRQFFVGYSTEE------------------------EAQSAIRHFDNTCIQTSRVRVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLGINKNRENEEEDDEEQEESRAARDDSGVDADAGDEDGSGDEADEEEDTDKLAEKPISDLEYMKSLMATTSGEATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLK---KTEKDMAKGMLKNKSFIKGKQVFFSDFTEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKN...................................................................................................................................................................................................................................................................................................................................................... 446
6 -17.600[J] KOG2147 Nucleolar protein involved in 40S ribosome biogenesis  ali follow..  6...........................................................................................................................................................................KQKQRKTNPFELKFNKSKHDILGRKKGAQV--ASRKRAHEQREQTLGVEYDRKNKISKIVDK-RLGEKDGKSEEEKTEERVKNYKRASKFNLTDDGDEEEEVLTHKGKALSDIEKYDKSMISDSDDDEEPGNLGSNMVKVAHFGGGEKTAEEHVREKISREDMISNLIAKTKLARHEKQQQKDELELMTESLDSKYQALMGKMKASFRPTGRQPLEKDDYDKLTITLKTEADARATPADRKLSEEEEALKEKERLETLEAAPDADVDIDAGSKADARKVQAKNSRFEVKFDDEGGLIDEDTVEKSRILKKNLDGSDESDDDEDLEDEEEDLDDLLEDEDELEEDS....................................................................................................................................................................................................................................................................................................................................................................................................................................... 356
7 -17.000[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  562..............................................................................................................................................................QMIDEFSDVNEGEKELMKLWNLHVMRQLPIACEMFLDAKG--TEIVRK------------------NLYRNFILHMCS--FDYGLIAAETVYKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRA....................................................................................................................................................................................................................................................................................................................................................................................................................................... 905
8 -16.900[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGT---AFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKR.................................................................................................................................................................................................................................................................................................................................................... 96
9 -16.800[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  3.................................................................................................................................................................................................................................................................................................DRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYIRS.................................................................................................................................................................................................................................................................................................................................................................................................................................. 246
10 -16.800[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  7.........................................................................................................................................................................................................................................................................................................NADDDGKRVQNEEGNYDPTDHQRQMEDYYKQYEEQRQVANSFHNTTGRPDLVAMQARLAETEQAIHRLNEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCPQDVRTMTKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGW........................................................................................................................................................................................................................................................................................................................................................................ 291
11 -16.500[B] KOG2266 Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain  ali follow..  10  3...............................................................................................................................................................................................................................................EDTKATIEPTANKTTSLEKPSEAMAGKENAGGKETQELAKDEDMAEPDNMEIDAQIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMDEDADGKKEQTDDGVSVEDTVMKENVESKDNNYAKDDEKETKETDITEADHKKAGKEDIQHEADKANGTKDGNTGDIKEEGTLVDEDKGTDMDEKVENGDENKQVENVEGKEKEDKEENKTKEVEAAKAEVDESKVEDEKEGSEDENDNEKVESKDAKEDEKEETNDDKEDEKEE....................................................................................................................................................................................................................................................................................................................................................................................................................................... 279
12 -16.400[K] KOG2393 Transcription initiation factor IIF, large subunit (RAP74)  ali follow..  149.................................................................................................................................................................................................FVAIPAGSWY--NFNKEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPPRGTPPAKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................... 478
13 -16.200[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  2...............................................................................................................................................NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQY-VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVM---SSFGQIEECRILRGPDGLSR-VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS...................................................................................................................................................................................................................................................................................................................................................... 479
14 -16.200[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  2...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ADVLDIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV............................................................................................................................................................................................................................................................................................................................................................... 146
15 -16.200[S] KOG4610 Uncharacterized conserved protein  ali follow..  11  299.......................................................................................................................................................................................................................................................................KNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 523
16 -16.100[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  10  333.........................................................................................................................................................................................................................................................................................................SKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 531
17 -16.000[S] KOG4051 Uncharacterized conserved protein  ali follow..  10  180.....................................................................................................................................................................................................................................................................EKNATIKVKELPEYHTEENDSPIDVQKEPIKEVQSDEKELQREHMSEEEQKMKSTNKTAAPVRKSQRLKRSKEVKFEDEEKEEIEEDNTKDEEQKEKKEEIQEPKITHNEEVDKEKNENEEGDDEREKSTSYENTNGSESEGVDEGVDEELGYESEREAEGKGKQIESEGGNLKKKTENKKGDDQQDDTKKDSKDKNEPLAKRTRHSSSTGNTSNETSPKRKRRKAGSRKNSPPATRVSSRLRNKK................................................................................................................................................................................................................................................................................................................................................................................................................................................ 425
18 -15.900[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  2...............................................................................................................................................................................................................................................................................................................TIDSQQKTSKFRWGEMDEDEDLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSHLTMVSTEEILLERPRAPGTKADESKATGDGLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATP.......................................................................................................................................................................................................................................................................................................................................................... 291
19 -15.900[S] KOG1793 Uncharacterized conserved protein  ali follow..  2.........................................................................................................................................................................................................................................................SDHEEESHGASPTSPASSGASSPLAPISPRSEGNAPESPSGDVQDIYKDESFEAPASPARDSSAPASPSAASPAGSRSPSPSPVKTKSKVMIDSDEDSDAEESANKRALIDSDASDAEGKKRRVMLDSDDSDHEGTSKKEPTTKNLFGDDSDDDDEDRPKKTNDLDEFVEGRDEEESQETSKPAYDSDDDDGPVDRHGRHFEWDFDKMLAEKKAERKKKTRRGGKDGGIDIINDDDGTVSRLVERMKHAAKSDRNANIERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALS--APLPDKCL------ALDIRITVLKLLHNPRFWKLDRSTLKQS---------KAVMMLYKHPNETKENKGIANKLIGE........................................................................................................................................................................................................................................................................................................................... 366
20 -15.800[Z] KOG3756 Pinin (desmosome-associated protein)  ali follow..  419....................................................................................................................................................................................................................................................NEASKELEPEMEFEIEPDKECKTLSPGKENVSALDMEKESEEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQEQGHLLPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRS....................................................................................................................................................................................................................................................................................................................................................................................................................................... 690
21 -15.700[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  11  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................SDNDIIDDDVLNIEDMTGDDADLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRT.......................................................................................................................................................................................................................................................................................................................................................... 155
22 -15.700[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  10  3.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ASVELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQ.................................................................................................................................................................................................................................................................................................................................................... 114
23 -15.700[BD] KOG4563 Cell cycle-regulated histone H1-binding protein  ali follow..  114................................................................................................................................................................................................................................................................HVEEEEGEKTEDESLVENNDNIDEEAREELREQVYDAMGEKEEAKKTEDKSLAKPETDKEQDSEMEKGGREDMDISKSAEEPQEKVDLTLDWLTETSEEAKGGAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEKQGEVIVSIEEKPKEVSEEQPVVTLEKQGTAVEVEAESLDPTVKPVDVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEAGSEVSEKPGQEAPV....................................................................................................................................................................................................................................................................................................................................................................................................................................... 373
24 -15.200[A] KOG2217 U4/U6.U5 snRNP associated protein  ali follow..  26.....................................................................................................................................................................................................................................................................PRRVTEDEDVTLDLTDDSSSRHRHHKHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREEREREREKERIREREKERLRERERERERERVRELTAPPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPATKEREPSSRSFSPIPENGAGDVLSITETNK....................................................................................................................................................................................................................................................................................................................................................................................................................................... 280
25 -15.100[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  10  2..............................................................................................................................................................................................................................................................................................................................................................................ASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRL--VGSLHFNITED....................................................................................................................................................................................................................................................................................................................... 261
26 -15.000[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  10  2................................................................................................................................................................................................................................................................................................................................................................TKKLALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPKRDSSKPEYQDSDTSDEEDIRNTVGNIPMKKIIKPPQGDQIDEFLRKIED----TVKDPLTGQD------VRLTDED---ALIKRIVSGRITSEVEKMPIKNVPDHKRSFLPS--------VSEKKRVSRMVHALKM........................................................................................................................................................................................................................................................................................................................ 291
27 -14.900[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  23..........................................................................................................................................................................................................................................................................................................................................................KIEDGVKYKITQKVKEVKVLEKVHKSVAERKNWHKYGSEKGSPAGPSAVTARLGEEVELRLSRNWKQAEEERIQKEKASLTKTGLQCRLCGNDHMTMNCPFKTILSELSALEDPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE...................................................................................................................................................................................................................................................................................................................................................... 274
28 -14.900[U] KOG1162 Predicted small molecule transporter  ali follow..  1..............................................................................................................................................................................MVKFSKE------------LEAQLIPEW-KEAF------------------------------------VNYCLLKKQIKKIKTSRKPKPASHYPIGHHSDFGRSLFDPVRKLARTFSDKLFSNSEKPEILQVRRRRGSSETGDDVDEIYQTELVQLFSEEDEVKVFFARLDEELNKVNQFHKPKETEFLERGEILKKQLETLAELKQILSDRKKRNLSGSNSHRSFSSSVRNSDFSAGSPGELSEIQSETSRTDEIIEALERNGVSFINSATRSKTKGGKPKMSLRVDIPDAVAGAEGGIARSIATAMSVLWEELVNNPRSDFTNWKNIQSAEKKIRSAFVELYRGLG-SLNMIAFTKIMKKFDKVAGQNASSTYLKV-------SQFISSDKVVRLMDEVESIFTKHFANN---RKKAMKFLKPHQTKDSHMVTFFVGLFTGCFISLFV.......................................................................................................................................................................................................................................................................................................................... 401
29 -14.700[R] KOG0226 RNA-binding proteins  ali follow..  2.........................................................................................................................................................................................................................................................................................................................ANLDDELALFESELAELEQASSNSEEPASSQTHVGYDNATISAGPTTSESSAATSSAQVIQPSLLAAPPFIPIAATIAVSPFINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGAPALYETPAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKELG....................................................................................................................................................................................................................................................................................................................................... 300
30 -14.700[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  233.....................................................................................................................................................................................................................................................................ISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 484
31 -14.700[R] KOG3175 Protein phosphatase 4 regulatory subunit 2 related protein  ali follow..  11  179..........................................................................................................................................................................................................................................................................RPKVSLSAPMTTNGLPESTDSKEANLQQNEEKNHSDSSTSESEVSSVSPLKNKHPDEDAVEAEGHEVKRLRFDKEGEVRETASQTTSSEISSVMVGETEASSSSQDKDKDSRCTRQHCTEEDEEEDEEEEEESFMTSREMIPERKNQEKESDDALTVNEETSEENNQMEESDVSQAEKDLLHSEGSENEGPVSSSSSDCRETEELVGSNSSKTGEILSESSMENDDEATEVTDEPMEQD.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 417
32 -14.600[R] KOG4334 Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain  ali follow..  2...........................................................................................................................................................................................................................................................................................................................................................EQESGGKKSNEQLLSEREAIMRQLAMLGSGPEDLDVDDEEEDEEEEVEKMEEGVEETMENASVVKETTPVKDENIVEDSNSSEELFPYLDSPPEDKIQEISANDTEIDQIDSPIRFEGVKNPAQKMDVDGEEGTSTDARPVSGSSGSSVGEQIRAPVPVLKTIMDRIDLDKSNPLPE----------------------------------GWTVISHQSGM.................................................................................................................................................................................................................................................................................................................................................................................. 189
33 -14.600[M] COG3064 Membrane protein involved in colicin uptake  ali follow..  32...............................................................................................................................................................................................................................................................................SSFDEHIEASAGGGGGSAIDAVMVDPGAVVQQYNRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQERLKQLEKERLAAQEQQKQAEEAAKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAKKKAEAEAVKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAAEAKKKAEAEAAKAAAEAKKKADAEAAKAAAEAKKKADAAAAKAAAEAKKKADAAAAKAAADAKKKAAAEKAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................... 276
34 -14.500[S] KOG2690 Uncharacterized conserved protein, contains BSD domain  ali follow..  167........................................................................................................................................................................CEEPEDSDDYKKWESAFKAEEMEKLLEENGDMKGVYKRVVPSMVDH-------------ETF-------RVNKLKQAEDLRANLVKRAISLDDEEELSWDIDDEEESSEKVVEATKDVSRLKLEGNDGMGGGDVSETVKDEVESTYSVAKVSTQDEVTSADSVTEVSNVGLKTDKDSEEKKETDSEEVPEEKSFVDAAPPASDEAPIQDSVKPTSDEAPIQDSVKPKSDEAAPSQDSAKPDVAASSSTQQPSEEDLGWDEIEDMSSIDGKETSRSGGSPNRAELRKRLSAAEEDEDLSWDIDEDDEEESSSSKA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 470
35 -14.500[A] KOG2600 U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p  ali follow..  80......................................................................................................................................................................................................................................LELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGSEIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDEDSDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDIDSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEEAEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSFEKRQE....................................................................................................................................................................................................................................................................................................................................................................................................................................... 365
36 -14.400[R] KOG2030 Predicted RNA-binding protein  ali follow..  524.....................................................................................................................................................................RDAQQNELIVKRY-----------------MRPKDIYVHAEIQGPTGEEIPPKTLLEAGSMAISYSVAWDAGEYGSFMIRGKKNFLPSCHLTMGLSLLFKLEDSFIERHLGERKVRSLEDDQIDPNVKENEVEHDLLSDNEDADSNINLSEPSSNTEITAFPNTEVKIEHDTGRIIVRSDSVNPEIEETKESEVVLDKILKKTDDEETTIILAGPSRKKQVSAKKTKEDKARAKQEAAKQEVPPVSSEPKNPSQVKRGQKGKLKKMKQKYKDQDDEEREIRMMILKSSGKEKPQASADKVVEKSESTKEYVKPEKSAAPKNPVELDDADEVPVGGDVDVLNSLTGQPHEGDELLFAIP-------VVAPYQALQNYKFKVKLTPGTGKR--KLALNIFAKEKSCKDLLKSIKEESL---------ARNIPGKVKLSAPQLQKYHK......................................................................................................................................................................................................................................................................................................................................... 972
37 -14.300[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  10  2...............................................................................................................................................................................................................................................................................................SETELSKEDAVTKKDNEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNAKYNIDPKSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNK-----KNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKR...................................................................................................................................................................................................................................................................................................................................................... 321
38 -14.100[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  11  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRD...................................................................................................................................................................................................................................................................................................................................................... 96
39 -14.100[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  17  2..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRG...................................................................................................................................................................................................................................................................................................................................................... 79
40 -14.100[KB] KOG3265 Histone chaperone involved in gene silencing  ali follow..  119............................................................................................................................................................................................................................................................................TDEELKENPPAKPLIEKVLFFSGKKHFISKHQLLSNDSPFLIVRTVFVESNKALHLTSNEDDCSGNYKTCINNSSDSFVENLSRKIETEDLRVTTFPIRWTDEDPVAEPVDEEANKVFDEDDLMPLHDDGQDDDEEEEDDDETGPNTEEVDLNESFNERMANAHDGTEQKNGEESMEHDGASGDVEMGDNQLFVQINTDTKATESMVDPLSDTTKRDFRS................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 338
41 -14.000[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  11  24...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................WVYRFQASSMAFCTKLGGHWKQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSL...................................................................................................................................................................................................................................................................................................................................................... 145
42 -14.000[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  447.....................................................................................................................................................................................................................................................................EFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIP---APPSSQQNFNIIV.................................................................................................................................................................................................................................................................................................................................................................................................................................... 701
43 -14.000[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  11  656.................................................................................................................................................................................................................KNMIREQDLQLEELRQQVSTLKCQNEQ---TAVTQQVSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI...................................................................................................................................................................................................................................................................................................................................................................................................................................... 962
44 -14.000[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  2................................................................................................................................................................................................................................................................................................................................................................................................................SGARRDNRRSNGRDDSSRVAKAENDRKPGRENRGGDEKRGNSNNAARSGGGGGGNRGGAERGIAPAQQPYDNNGGHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS----GKGF---AFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGAA-VKELSPTVSNEMVHIVD-PNCNEAMAAIRDK....................................................................................................................................................................................................................................................................................................................... 252
45 -14.000[K] KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A  ali follow..  12  1........................................................................................................................................................................MAAESALQVVEKLQARLAAKKLSTLLRKHEHAQW-KKLVPVERNAEPDEQDFEKSNSRKRPRDALQKEEEMEGDYQETWKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPGKGHSNAFQDRLGASQERHLGEPHGKGVVSQNKEHKSSHKDKRPVDAKSDEKASVVSREKSHKALSKEENRRPPSGDNAREKPPSSGVKKEKDREGSSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGSNNLKTPEGKVKTNLDRKSL....................................................................................................................................................................................................................................................................................................................................................................................................................................... 385
46 -14.000[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  133..................................................................................................................................................................................................................................................................................................................................................................................ADEIVEPEANKKEVEEVIPQVVQPTEQVDEVAEPVTIPTQQPEAKQTTENTVKKPERAVANGHPKTQEDNVVNDKSNGVDAPKKSFAHIVQDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQKESAIRIGNRRVSIEEKRGNNDN...................................................................................................................................................................................................................................................................................................................................................... 361
47 -13.900[S] COG5139 Uncharacterized conserved protein  ali follow..  10  2.............................................................................................................................................................................................................................................................................................................SEEEKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEPTIYNLPTFKKKQEPNTIEENLEVPRKVRKEQKPRRRRGKRSSTVDALNDELNELGENEEEVLTEQKQLDPTLAAKKELDLQMDAVLKPTRTKKRSNEDNLEQMADDEVLRLREQMRLAALRDAELNSEQLPATEKLMLPLVDAVLRKTHLYDTILDNNVLDSVR--------------WLEPLPDRSLRSLMDILTKLPIQTEHLRES---------RIVLFYTISKKPEPFIKRIADNLVSE........................................................................................................................................................................................................................................................................................................................... 312
48 -13.700[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  10  2.......................................................................................................................................................................................................................................................................................................................................................................................................................................SNLKPDGEHGGSTGTGSGAGSGGALEEEPQNLGFGRGQSCELEAGIHRGIIQWDHPPPPCHRHHHHHTYPNLLQDTVSVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQ------GFVIFDSRAGAEAAKNALNGIRFDP.................................................................................................................................................................................................................................................................................................................................................................... 157
49 -13.600[R] KOG2507 Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains  ali follow..  133......................................................................................................................................................................................................................................................LDPNEVRSFAGADGSSSTGESQVVQTASENFRDPETTSVSNSPTGGVEEAKTNPPNSPVAASLASIPAAVSTSSLEGKSGSEAEAASPTALAAEKRAAASKVEGSATTSGAAARNFATNNLIPAVPLMTPAVPVPTQRPLEAQDNTESEERLAEVRNILEQKRKERVEEEKRMEKENELRRRRDGREAQSQQARAKEQELKNMQEQIKRERQEELAARERIRAQIAADRAEQAQRFNTPDISSTTNSVAATAASNVITTDASVSSVDETRLQIRSFPAGEVLATVRVYVRN-SDVRDFTLATSYPRREF---------QTEDEVKTLNELN.......................................................................................................................................................................................................................................................................................................................................................................... 467
50 -13.600[L] KOG4762 DNA replication factor  ali follow..  1........................................................................................................................................................................................MAQPSVAAFFTNRK-----------------RAALDDAISIKNRRLVEPAETVSPASAPSQLPAGDQDADLDTLKAAATGMRTRSGRTARLIVTAAQESKKKTPAAAKMEPHIKQPKLVQFIKKGTLSPRKQAQSSKLDEEELQQSSAISEHTPKVNFTITSQQNADNVQRGLRTPTKQILKDASPIKADLRRQLTFDEVKTKVSRSAKLQELKAVLALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISPLKTFKTPTKIPPPTPDKHELMSPRHTDVSKRLLFSPAKNGSPVKLVEVPAYKRYASLVESSRAGQL---PLPYKYRH--LLDVFKGLDSVVAM----------HNRKETITFK---KLKPAVQRMLRKNFTETHLA................................................................................................................................................................................................................................................................................................................................................................ 369
51 -13.600[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  53.........................................................................................................................................................................EAEKYGPMVRSNGESSKQKHDFDINAELFNSQWF-----TCEQDYFAHVYGKKHQEKANEVADMDYSKQQSEHPAVDKNNLTQQPDLDIYVGLSNDYP--DINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDYSKQQIEVDINVGLSNCYP---NVKATCQQNLLSHANGRKHRENVELFDATQQQQLEKTTVDKKDTTVNASDGNSEQKKVDLLVSSGVANGYSQAHKKRKLETCDETWKREVVQAEEAKGGGEQKSESKKAKKQDKEKKRKKDKKQTKSDSDFEHDKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRMYNRIVV..................................................................................................................................................................................................................................................................................................................................................................... 479
52 -13.500[N] COG3351 Putative archaeal flagellar protein D/E  ali follow..  1.........................................................................................................................................................................................................................................MEMG----YVTDAEINAKLAELKGKVPSVVINELREKLMAKKDTLTPKQLDEIIKRVLDAYGSQAAKYEQISKRVDELGKKLGELSSQLSRLVEALEEKKFAVHEKKAESIAEKAAEVTEKVERIEELLEEKPKEEKSELAKKVEEIHKKVEELEEKLTGEKLEETKKKVEELEEKIEKGEEVTAEEVGELAEKVEELEAEAAKPEEEVVVEVPEEEEKVEVVEEEVPPEEEEVVTPEVEVVEEEKKEEVEEEKEKEEVGKMSEKMKIPEDIASILFEEEPKKARLEEIPEDVVSIMI-GFLIDRVGIQNLE-------EFYYEIGWISEKVLNQLLRFARGTR.......................................................................................................................................................................................................................................................................................................................................................................... 340
53 -13.400[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  484.................................................................................................................................................................................................................................................................................................................................EREEGTLAELDLVLEKVNSQVAHRAIRPQKKVSEKPAPAPKSKQDHIQKRTSGGEPIVKKVKGDDGGFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDLVHRGENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKP--GIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKK...................................................................................................................................................................................................................................................................................................................................................... 764
54 -13.400[L] KOG2310 DNA repair exonuclease MRE11  ali follow..  393............................................................................................................................................................DILIFSKASKKGRSEANIDDSERLRPEELNQQNIEALVAESNLK------------------------------MEILPVNDLDVA-VNKDDKLAFYSCVQYNLQETRGKLAKDSDAKKFEEDDLILKVGECLEERLKDRSTRPTGSSQFLSTGLTSENLTKGSSGIANASFSDDEDTTQMSGLAPPTRGRRGSSTANTTRGRAKAPTRGRGRGKASSAMKQTTLDSSLGFRQSQRSASAAASAAFKSASTIGEDDVDSPSSEEVEPEDFNKPDSSSEDDESTKGKGRKRPATTKRGRGRGSGTSKRGRKNESSSSLNRLLSSKDDDEDEDDEDREKKLNKSQPRVTRN.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 714
55 -13.400[Z] KOG3809 Microtubule-binding protein MIP-T3  ali follow..  29.....................................................................................................................................................................................KPPF--RYLHDIITE-RMTGFMKGLYTDAEMKSDNVKDKDAKISFLQKAIDVVVMVSGEPLLAEPERTNELLQIIGKCCLNKLSSDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHDKPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGRKEDNISAKSLDSIVS....................................................................................................................................................................................................................................................................................................................................................................................................................................... 371
56 -13.200[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  4..........................................................................................................................................................................................................................................................................................................................GVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKS-RGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK...................................................................................................................................................................................................................................................................................................................................................... 285
57 -13.200[J] COG5384 U3 small nucleolar ribonucleoprotein component  ali follow..  8...............................................................................................................................................................................................................EPTLFLFPNKEDSKQLVEKAIEVFSNISTSPIQTIVTKGLDNWQIYNQLALAAKYALDDLPQVDVENEDEEEDSITSFQDEDDETSHQELSDNSEMNNRDDADDEFLGFSGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQKKDAFGLNDGFFDIDNFNKQTLALEEEAVEEGVLGDEDDGIDLLMDPDENMEDSEDESNGPQADSIMYEDFFGPKTAAGRRELKKKKAESKRKRTSKPDFKNDVQQNVIEENNESSDNEYATFDRVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAEN........................................................................................................................................................................................................................................................................................................................................................................................................................................ 318
58 -13.100[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  60................................................................................................................................................................................................................................................................................................................................................................................................................................SEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP-----GIAFVEYEDDVQASIAMQPLQGFKIPQNPMVISFAKK.......................................................................................................................................................................................................................................................................................................................................................... 232
59 -13.100[S] COG5604 Uncharacterized conserved protein  ali follow..  3............................................................................................................................................................................................................................................................................................KLSSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQYVPKVLNY........................................................................................................................................................................................................................................................................................................................................................................................................................... 246
60 -13.100[J] KOG2256 Predicted protein involved in nuclear export of pre-ribosomes  ali follow..  3............................................................................................................................................................................................................................................................................................KLSSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQYVPKVLNY........................................................................................................................................................................................................................................................................................................................................................................................................................... 246
61 -13.100[A] KOG2412 Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor  ali follow..  7...............................................................................................................................................................................................................................................EVFNSDTDSPEFEETCSTTSSTSSQCPTPEPSPAIKLPSFTKVGTKKLVNESVVILDPALENALRDLNLQSKLIPINEPIVAASSIIVPHSTNMPLPRASHSSLLDNAKNSNATAPLLEAIEESFQRKMQNLVLANQKEIQSIRENKRRVEEQRKRKEEEERKRKEAEEKAKREQELLRQKKDEEERKRKEAEAKLAQQKQEEERKKIEEQNEKERQLKKEHEAKLLQQKDKLGKAVTNFDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFSNQQLFKIQNELTQLIN............................................................................................................................................................................................................................................................................................................................................................................................................ 315
62 -13.000[S] KOG3100 Uncharacterized conserved protein  ali follow..  213....................................................................................................................................................................................................................................................QTEKKDSKIVPGNEKQIVGTPVNSEDSDTRQTSHLQARSLSEINKPNFYNNDFDDDFSHRSSENILTVHEQANVESLKETKQNCKDLDEDANGITDEGKEINEKSSQLKNLSELQDTSLQQLVSQRHSTPQNKNAVSVHSNLNSEAVMKSLTQTFATVEVGRWNNNKKSPIKASDLTKFGDCGGSDDEEESTVISVSEDMNSEGNVDFECDTKLYTSAPNTSQGKDNSVLLVLSSDESQQSENSENEEDTLCFVENSGQRESLSGDTGSLSC....................................................................................................................................................................................................................................................................................................................................................................................................................................... 484
63 -13.000[TU] KOG3895 Synaptic vesicle protein Synapsin  ali follow..  345.............................................................................................................................................................................IDAKFSNYKA-FMRKSITGNWKTNQGSAMLEQ----------------TLTEKYKSWVDEISEGGMEVCGLSVDGREYIISACDSTFALIGDTQEEDRRQIADRPSMAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGPPPIPERTSPAVGSIGRLSSRSSISEVPEEPSSSGPSTVGGEIANKKRGRTASETSSGSGPGSVPSSAGPGSGFSSSFLGKQFSFAGKGEGVISTQPTQRPSEEPPAIPTTASSAVRPESSVSVSDSRNTDTLTERAGAGYQPVTNYEQQERVNPFDKEPSKSGSAASIHTSSSSSISSSSISSRINRNGNAI....................................................................................................................................................................................................................................................................................................................................................................................................................................... 695
64 -12.900[R] KOG4227 WD40 repeat protein  ali follow..  531....................................................................................................................................................................................................................................................SDSEENVCEVELDTDLFPRPRSPSPEDESSSSSSSSSSEDEEELNERRASTWQRNAMRRRQKTTREDKPSAPIKPTNTYIGEDNYDYPQIKVDDLSSSPTSSPERSTSTLEIQPSRASPTSDIESVERKIYKAYKWLRYSYISYSNNKDGETSLVTGEADEGRAGTSHKDNPAPSSSKEACLNIAMAQRNQDLPPEGCSKDTFKEETPRTPSNGPGHEHSSHAWAEVPEGTSQDTGNSGSVEHPFETKKLNGKALSSRAEEPPSPPVPKASGSTLNSGSGNCPRTQSDD------------------------------SEERSLETICANHNNGRLHPRPPHPHNNGQNLGELEVV--AYSSPGHSDTDRDNSSLTGTLLHKDCCGSEMACETPNAGTREDPTDTPATDSSRAVHGHSGLKRQ-LEDTDSENSSSEKKL............................................................................................................................................................................................................................................................... 940
65 -12.900[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  13  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPF---AFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRV---LVSGLPPSGS..................................................................................................................................................................................................................................................................................................................... 123
66 -12.900[J] COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis  ali follow..  563.......................................................................................................................................................................SVSTKKEHLSYDGRKRD-------QYSNADGSCLWFLNHFHPTVSLLAKSLVYGEKILGKPNLSLHTLNHFLDKFAYRNPKKSAAARGHSIMQPLAGGLSKGYVPGSTYSGVPMNSEQFTSKKQEEIPVDELFFYRFFNDKYIKGKQARKTKVDRDEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSEDEFDDTVDFFEDENDLLPFNETDDEEEIQTVDHSETHSHKKKKRKAIKDLPVFADAES............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 853
67 -12.900[S] KOG2465 Uncharacterized conserved protein  ali follow..  480....................................................................................................................................................................................................................................................ASAKNTDTPEMSEVYCPSCEDPSNESPACLAKMPDKRPTRLKPKSSILSVESELLVGKRSSFRLPSEIKRKQQGGSITRSASLSAADRRTSLPVATKRIIPPRLRTAKAKDLEKDKEKEKDKNKENDKKSSNQKVNGSATNFLAKMSPKRLKAGKEKDKDKDGNKEKEKDKFKAMDAAKKKAVNNNNPKPDISKSEEYEIADDATSLNGSESEPVGAAKMVILSESDSKLMISVRGREELPVVDSPKTPPKRFEKCVSLPVEPESHLLQPDE....................................................................................................................................................................................................................................................................................................................................................................................................................................... 751
68 -12.900[OT] KOG0505 Myosin phosphatase, regulatory subunit  ali follow..  10  628....................................................................................................................................................................................................................................................AESLRKARSRQARQTRRSTQGVTLTDLQEAERTFSRSRAERQAQEQPREKPTDTEGLEGSPEKHEPSAVPATEAGEGQQPWGRSLDEEPICHRLRCPAQPDKPTTPASPSTSRPSLYTSSHLLWTNRFSVPDSESSETTTNTTTAKEMDKNENEEADLDEQSSKRLSIRERRRPKERRRGTTKDEDETDGSEEVKETWHERLSRLESGGSNPTTSDSYGDRASARARREAREARLATLTSRVEEDSNRDYKKLYESALTENQKLKTKLQEAQLELAD-----IKSKLEKVAQQKQE--RSSVLE----EKRERRA----RKMSEMEEEMKNLHQ-------------------LKQIQTLKQMNEQLQAENRALTRVVARLSESIES.................................................................................................................................................................................................................................................................................................................... 992
69 -12.900[P] KOG4505 Na+/H+ antiporter  ali follow..  486....................................................................................................................................................................................................................................................SIRRRHPVNIQEDEDADISTVSLPEAAHLREERAESPRGGHYDAEEFPSEDYESRQPRRSNEEDREEEMNPGDETYLIGEDLVVEDSQGNIISHTSSRDANGPSIDEKLAQGDPKAKSFGRKFRSFLRRSYDTFQRNLHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSESEDDNIPRPGIVPFYNENNESSSDTRNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNEAQHRPNIRFLELTRA....................................................................................................................................................................................................................................................................................................................................................................................................................................... 757
70 -12.900[S] KOG4483 Uncharacterized conserved protein  ali follow..  10  378..........................................................................................................................................................................................................................................................................TPNSDALLQKKLSEVVHNPPQRAIGLSAFPAFPQQPPHLTRFQENQRYEGNFVEYQPPPPQQHQQQQPQAPEGFYPPISLNTRYDYDSDRDILPLLLDTFQPLPAPPQIPPVTVSVPVSVPELLTSTKKPSQPAKVPAAPIKAPRLSDQELESESQKLALDVISNLFSNKKEIIDRAAVLSAPKKPVARNLFCNDPESLEKAKSSEPLTMSVLDDWETADDDDLTVRMENLLKDKKKEEKKAQSMSKAPPLEIYGVPDYKMQEDVVKAMETIGDCK-----------------WMVFESVNRAKNCLTLSKHDWLRFRSLADSPKVVQDSAKTNAASLGILKKKQQTTATVARRMVENLGKKATVSTEKRQEERKQLAAAKAAKKNTIQ............................................................................................................................................................................................................................................................................................ 777
71 -12.800[Y] KOG2992 Nucleolar GTPase/ATPase p130  ali follow..  12  346.....................................................................................................................................................................................................................................................................AKKAASSDDSSSEEEAPKKAAPAKATPAKATPAKKAASSDDSSSEEEAPKKAAAPAKATPAKKAKSSSEDSDSDEEEAPKKPAAKAVAKAASSEDSDSSEDEKPAKAAPKALAKSAKAASSDSDDSSDEETPAVKPAVKKTAAPAKKADSSSDESDSGEESGEVKPNSATNGNEKTAQKRKFSGGDQDEATPNKKYNNFVKSGEQQKNDFTSTPNNTFSRNHNMNNSGGGSGRRSPFRRVRTEDVVVDSRVQDMSFEAKKNAAGSWGERANKDLKHTRG-------EKTKKKR-YRGG-IKFD....................................................................................................................................................................................................................................................................................................................................................................................... 654
72 -12.800[A] KOG3408 U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing  ali follow..  16  37........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESEKFDKLPIDPDLPGLGQHYCIECARYFDSSQALLVHKKGKHKRRLKNLREE.............................................................................................. 90
73 -12.800[R] COG5112 U1-like Zn-finger-containing protein  ali follow..  16  37........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESEKFDKLPIDPDLPGLGQHYCIECARYFDSSQALLVHKKGKHKRRLKNLREE.............................................................................................. 90
74 -12.800[R] KOG1995 Conserved Zn-finger protein  ali follow..  30........................................................................................................................................................................................................................................................................GGGDAGYGGRGASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRGGRSGGYDGGSAPRRQEASYEDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYN-ACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAE---KSAPRAPTFDQSFIILVGNMS................................................................................................................................................................................................................................................................................................................................... 391
75 -12.700[U] COG5066 VAMP-associated protein involved in inositol metabolism  ali follow..  10...................................................................................................................................................................................FFYPPFTTMSKELISVHNPNPE-FKKHYRPNSGKIEPKSTVN-----VQVLLQAMKEE--DKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPPQSADKQVENTSTSNPPVSVEGSENLASSVGGPTAVGVSLDEAQNDFNGAKDHLSNGVNTVVPDSTFRSTFESAQIPDASVVQTVVTDADNGAASVKDTIVTAESASSKGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVSENLGSETRESLQGAKPAAGAHSSDNALEQIKPSYSADPSSSTGASLTESPGIPPNI--------------VIILCLI-----------GYLFF........................................................................................................................................................................................................................................................................................................................................................................................ 383

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.