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Query: [S] KOG2365 Uncharacterized membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNRSEPIPIRRDRSFDSVINRLLRMRSQNHESFRAAMYNFLIAAGVAAFVAVCFILGPFVRPLLWAFLMGAVLFPFKRRLAESVNSWFHRLEVRDSNVLVSICLSPLEATEHCGRLLIGWLCEHWQLLLAGCGVAGCIKLLVLYAPKGFLLAIWHWITFSHGLFVQIIGFLNVYVLISLIVVYLSCVHFFWRPENSAHFVVAGQSMWIAVAGYLSSFLGALQVPVFLLVMTYVTASTAYHLQTLDDSGSYLHRLQKLFDKNDFERSLSNFSICGRPGNEPLSPGLQSDVEDVSLSDTVDSTDTFDVKPETEVPSHQSDTFFKLLFYACLGTFLYRNVWMFILAAIPVILHLIYTVGEYTGITKFVCNKISEVYAALRFWAIEHHSAVLPLCLPGVLELNYKINTIVRDSLKASVESVTSILMIILMLLIIVFLSVFFCVNIYSETIEVAYLGKDLINKTITDRPELIDILPANMQSSIEDALDNAHHYGRRKIETYIDDWLADADKVHATKLKEQILEVWDRLIQYWIDFNKAGSSYGPRVPTDALKSTFGEIVDNPDSYCVHLLTDGRLFNQGHFKELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFGPLMLCFFIGLFEVATLAMRSHQEPRNSTDEERTTLast
1 -220.000[S] KOG2365 Uncharacterized membrane protein  ali  100  1MNRSEPIPIRRDRSFDSVINRLLRMRSQNHESFRAAMYNFLIAAGVAAFVAVCFILGPFVRPLLWAFLMGAVLFPFKRRLAESVNSWFHRLEVRDSNVLVSICLSPLEATEHCGRLLIGWLCEHWQLLLAGCGVAGCIKLLVLYAPKGFLLAIWHWITFSHGLFVQIIGFLNVYVLISLIVVYLSCVHFFWRPENSAHFVVAGQSMWIAVAGYLSSFLGALQVPVFLLVMTYVTASTAYHLQTLDDSGSYLHRLQKLFDKNDFERSLSNFSICGRPGNEPLSPGLQSDVEDVSLSDTVDSTDTFDVKPETEVPSHQSDTFFKLLFYACLGTFLYRNVWMFILAAIPVILHLIYTVGEYTGITKFVCNKISEVYAALRFWAIEHHSAVLPLCLPGVLELNYKINTIVRDSLKASVESVTSILMIILMLLIIVFLSVFFCVNIYSETIEVAYLGKDLINKTITDRPELIDILPANMQSSIEDALDNAHHYGRRKIETYIDDWLADADKVHATKLKEQILEVWDRLIQYWIDFNKAGSSYGPRVPTDALKSTFGEIVDNPDSYCVHLLTDGRLFNQGHFKELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFGPLMLCFFIGLFEVATLAMRSHQEPRNSTDEERTT 837
2 -20.400[R] COG0628 Predicted permease  ali follow..  15  88.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NEFARSLPQYRGMMLEKMRDLQEFALHFNIEFSVDDIMKYVDPSMAMNFVTRLLSHLSGAMTSTFLLLMTVVFMLFEVERMPYKVQ--LMFDNPEKGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPNIGSVLAAIPPIIQALLFNGAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIAKIVLE...................... 326
3 -9.830[R] KOG2140 Uncharacterized conserved protein  ali follow..  55.................................................................................................................................................................................................................................................HSRRGRSYDSSMESRNRDREKRRERERDTDRKRSRKSPSPGRRNPETSVTQSSSAQDEPATKKKKDELDPLLTRTGGAYI------------------------PAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLSRSVLQAQSASPIFTHVYAALVAII-IGELILKRLKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKEGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIH-----TEINLVSFRRTIYLA-----IQSSLDFEECAHKLLKM-------EFPESQTKELCNMILCCAQQRTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRL-------------ETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFF.......................................... 587
4 -9.690[J] COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis  ali follow..  40..............................................................................................................................................................................................................................................YNIPLPELHEDKKFVNVDHVSELETRGLLLLKEDSERFSETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKALETLLSICQAITTLKDLFIGGLLPDRKLKYM-DKHLMVWAFESFLKSFYFKYIQIIEALSFDALLFVKSQMVSTIYDLLKAKPEQEQNLLKLLINKLG------------------------DKENKIASKASYSILQLEASHPAMKLVITKEIERFIPSTSRTSCYYTLITLNQTVLT-------HKQVDVANLLIEIYFVFFTKLLFALEKEEVADPTLEKKSLQSDSKNKKSQKRKKDEDLRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAITHTASFNTSVQVLMLIFQASASRDFISD-------YYKSLYESLLDPR-----------LTTSSKQSLYLNLLYKSLII--NNIPRVRAF-------IKRMVQVSAWQQPPLVT---GLFHVMHQLVIATTALRSM............................................................................................. 509
5 -8.950[JU] KOG2153 Protein involved in the nuclear export of pre-ribosomes  ali follow..  177...............................................................................................................................................................................................................................................KLKDGTLIRPTREKEVKEDEEEKSGDEEEEGEEDEPHREDFSHLSASELIAKRRELMQEFKDTIASHANMLLSNPQVNIVRLRDLYNLC----------SVQKLAIASTLQVLLDILPGYAIREQTAEEKAQKQKKETRNLVNYEESL----LRYHLKYLQLCEKLSNKLVGKDRHNDESTFTFKMGILSVKALARIVVSAPHNYSTNIVSS---LVRLSLAKNETVIREVCEAIRTVFK---EDIHLKITLFTARSISTLVTKRKVKDEDKKSGKDALIAKKYQIKKEKASKTAKKYKKQLARLEADLLEVEAEESMSKKLKNATEAMKFAFQSYFSILKRMPNSALLEPVLEGLSKIVSTMENMVQNENLKSLDQLHCINTVFVILSGDGQLL----IDPSKFYRLAYRVLNH----------LPFEKRPEQRKNQIIMAAKTLETMLVIRRKAVPLSRVAAFV-----RLLSIATVLDDFPALCIVSLVRSLFIAHPKLSSMIEDEEGGAPGIY-----------LASDVRDELRRRNTELSRFA.................................................. 734
6 -7.980[R] KOG2295 C2H2 Zn-finger protein  ali follow..  438...............................................................................................................................................................................................................................................TEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSYLRVAIADPLVERRWYRRGWITF-DVNIKEICWGLNN------QRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCAKIALNLDEKFRLWAEGPKDDSNSARANESSENGSGSTYGFNSQ--NPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERD---EQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPPPVRVTNNDVQEYIKIYESKLQQFLTKTVPLSDEEIKNLKDAETEVEKFVQANTGKKFKGPEFIRKHIFNKHEEKVDEVRKEVQYFNN--YLRDPKR..................................................................................................................................................................................... 858
7 -7.840[R] KOG2296 Integral membrane protein  ali follow..  10  5.........................................................................................................................................................................SLAVQLFIVFLLTSYLLNKYSTIRKQNPIVTISTFIGWYFSLIIV------FVLPLDVAITFF---------------------------------------------------------HKCENDRQRILNTTTSTPAPVVPECELPGGYVPDDVLFNLWRVVYWSAQLLTWLILPLLQSYVTA-----GNFTILGKIRAAVINNALYYA-----IYSLCFLAILIYAMFKGVSINIENLKVIVVSASNTWGLFLLVVLLGHGLVELPRSLWHHG------RHYRLRKTYFDIEKLASEKSEA-EENVKDIYKKVRV-----LFNSMKNDSNGQRRKVRTILSKFSDDVIDNLFPSRQVIDNAHLDESGPCSEAKLISLHKKTIYAVQTLNNATAQWKVLVDRALFLENLAFSESNGYNLELSRNTCVPIGVRRFWYTLQTPFCRILGIVTVFMTFFVLFSECTFFVVSYTLSPAAFVTEYASTRFHYK---------------------YTQFVAFGIIVYLITSAYFTIFRLQIYKYYHLSILFSAILLCRL--TPPICLNFLGMIHM--------------------ISMAKSFGIETQFTKLMGHLDVIPILAKGINIYL---------PICIILLCAIYRVGAYVLH............... 536
8 -7.750[T] KOG2290 Rhomboid family proteins  ali follow..  383................................................................................................................................................................................................................................................................................................................................................................................................................TYRKRIDSFVKRQIEDMDDTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIDPQVHSFIRSARE--REKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDEPSKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMT-----------------VLRDLEK-----LAGWHRIAIIY-LLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLL------------PWIDNFAHISGF----ISGLFLSFAFL.............................. 787
9 -7.520[M] KOG4629 Predicted mechanosensitive ion channel  ali follow..  180...............................................................................................................................................................................................................................................TLMKMKTRSRLMDPPTPTYPDMVSGRTPRSGNLNPGFSGRNTKPGTPNQGGSKDLEEEEDPFSEEDLPEGLRKEKICVWVIIEWIFLILIIASLWEVMVLVLICGRLVSSWIVKLFVYFVESNFLWRKKVLYFVYGIRKPVQNCLWLGL------LIAWHFLFDKKVEREMRSTVLKYVTKVLICLLVAVIIWLIKTLLVKVLASSFHMSTYFDRI--QESLFTQYVIETLSGPPRIEIHIEEEKVANDVKTFEIVGRKLSPLGPKAVSSPPQVTVGSGRLQKSPSRVGKSPVLSRSGSKKEGGEEGIRIDHLQRMNTKNVSAWKMKKLMNVIKKGTLSTLDEQIQDTTTQEDDKATQIRSAARKIFQNVAEPGSRYIYM-DESERAMDLFEGASECHKISKSCLKNWVVNAFRERRALALTLN---------DTKTAVNRLHRIVDVLVSI---------VILIIWLLILGIATTKFLLVISSQLLLVVFV--------------SCKTIFEAVIFVFVMH--PFDVGDRC---EIDGVQMIVEEMNILTTVFLRFDNQKIVYPNSLLGTKPIANYYRS.................. 753
10 -7.270[S] KOG2257 N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis  ali follow..  12  1.....................MLSLNQEVHGPKTSEVYGFVGSISIVVATVIF---------LIWGYVIGIYYYPSKY--------WAMAM-----PMYSMVTLLVALVFYIGLNFMSTSKPTSLNTLF.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 93

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.