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Query: [OT] KOG2561 Adaptor protein NUB1, contains UBA domain, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSQINNIFIKLRARLRERDIKLWEEPYYFEEVGSIESEMDRLARDISGELGISVSDCRIALGELQDGALRKLAARREFNDTGLATFNVRCVDSKGGTVQMLEIKCSLGGLGSDLQAEVAKKLDIVDSSHVKCISGGRIINGQKTLASQGLKTNQHLMVVVGGTNEGQELHERIQRIRADLELVADADRFMEMEDQDGRPIFLPREENRSLLMAMSMYEVARVAMHKENFDEALLILLEADELFSQCDSKLLEGVDNYALINLDIVWCYLRLKNITQLPDAQRRLDICERGFVKSYGEQFIRLFSIKGPSSPERALIMRLHLLQGVLLFHQNRRDEAYEKLEVATKDLYEVKMNDTELSTLVEMGYEESDARLALRSCAGQVDRAIQYIQERSERISEERKNSAAERQVNQEMIFAGQGGEWVNPRSIIRLMEMGYERRLVVEALKRTKNNLDRSLDLLQRHSDELRANLPPIPPVDESLLTTLQHLGFSEISARDALETTGNSFHKSLKFLLKSFPNESELLHVIETMTKVLEVQEPTSSTNATANSTTPLVNLSNSKVNLLQTVLSEAKSEIESYNAFKRFNENLAENNNHYLNLPLDQEEQILIEYKRLLEGLast
1 -173.000[OT] KOG2561 Adaptor protein NUB1, contains UBA domain  ali  100  1MSQINNIFIKLRARLRERDIKLWEEPYYFEEVGSIESEMDRLARDISGELGISVSDCRIALGELQDGALRKLAARREFNDTGLATFNVRCVDSKGGTVQMLEIKCSLGGLGSDLQAEVAKKLDIVDSSHVKCISGGRIINGQKTLASQGLKTNQHLMVVVGGTNEGQELHERIQRIRADLELVADADRFMEMEDQDGRPIFLPREENRSLLMAMSMYEVARVAMHKENFDEALLILLEADELFSQCDSKLLEGVDNYALINLDIVWCYLRLKNITQLPDAQRRLDICERGFVKSYGEQFIRLFSIKGPSSPERALIMRLHLLQGVLLFHQNRRDEAYEKLEVATKDLYEVKMNDTELSTLVEMGYEESDARLALRSCAGQVDRAIQYIQERSERISEERKNSAAERQVNQEMIFAGQGGEWVNPRSIIRLMEMGYERRLVVEALKRTKNNLDRSLDLLQRHSDELRANLPPIPPVDESLLTTLQHLGFSEISARDALETTGNSFHKSLKFLLKSFPNESELLHVIETMTKVLEVQEPTSSTNATANSTTPLVNLSNSKVNLLQTVLSEAKSEIESYNAFKRFNENLAENNNHYLNLPLDQEEQILIEYKRLLEG 614
2 -25.000[L] KOG0011 Nucleotide excision repair factor NEF2, RAD23 component  ali follow..  14  4....................................................................................TITLKTL-----QQQTFKIRMEPDETVKVLKEKIEAEKGRDAVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSG----------------------------------------------------------------------------------------------------------SVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEALLPALLQQLGQENPQLLQQISRHQEQFIQMLN--AIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE............................................................................................... 363
3 -20.200[OR] KOG0010 Ubiquitin-like protein  ali follow..  11  32..............................................................................AEPKIMKVTVKTPK------EKEEFAVPENSSVQQFKEEISKRFKS-HTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSNSTSGSATSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRLELA----ALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSLLQQITENPQLMQNMLSAPYMRSMM-QSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI--PSENTSPTAGTTEPGHQQFIQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFNREANLQALIATGGDINAAIERLLGSQPS................................................................................................. 589
4 -14.400[L] KOG0012 DNA damage inducible protein  ali follow..  10  9................................................................................................DDKVFCLDVAQDLELENLKALCAMEIGAE-VSQIAVIFNGRELSSDQTLQQCGVGDGDFIMLERRRSDDPETVRQMFLSSPETLSLLRQYNPSLAEAIDSGDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEYNPEIFGTVTMLYINCKPVKAFVDSGAQTTIMSKDCAER---HVNRLIDTRWNGVAKGVGTQPI----------LGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGL-LKRHQCLIDLQRN-GTTGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRESGG------------------------------------AGGGPNTISPQERFTEQDVTDLMALGYPRSDVLTVLRLCGGNKQAARSVLLHRNDAASGSE............................................................................................ 456
5 -13.900[O] KOG0944 Ubiquitin-specific protease UBP14  ali follow..  10  191.....GLNDNLWLNLTDGAVRCGRSQFLSDGKKTNGN--GHMQDYFDSTLVVKLGTISSNLELIDVYSYDDDAVIDPNLEKHLKHFGLDPTKMEKTAKSTMEMELDMNEK-SKCTEDGLLLEPIFGPGYTGLVNTGQALVTVDSFQTRYGEQGLETLVNCPLDKLHNDFNAQFSKVVRAM---------------SGDYSSEMDPTNNHIKPLQFKRVAAGSTSKQQDVEEYIRFLFEKIAE--EDRGRVRYTDQEEMLIRLPIS---GDYISPITGEPKGATNTISMKTFPDYLFFQVSKFAYNVDGTQKKLDMELEIEEELDLSGYRGHGKLEHEIALTAPRTTPDIPASVRFVAGELMLMGFCENACYRAAYYSNGNVEIASNWLMEHMDDSDINDLFVIPSGTPSARGE--------VDPNLVASIVEMGFSNHQAKYALKQV-PTVAEAVEWLFANMDSIPVESAAVGLSSDKLIGMISHMGFNDEKVALS-----QDPPKKLAYVY...................................................................................................... 752
6 -13.300[O] COG5207 Isopeptidase T  ali follow..  11  164ALEKIEKILKAKSQDFEDKKNSWVLEISTCP------HTENFQIPSKPENTVNLNQCCDLTQNLHSHALDHYRSNNNHPSSSTYDLYCYACDDETRFPDNVNLGSALQIYGINIQEKIADEKTLVQLQ--MVDSSGKEFEKLSASKNCGLIN-NSVIQSLVNGGVPNWSLDFLGSKFPLDVVYPDNNLKCQWIKLLNAMKCEPELYPNGIKPTTFKKCIGQSSNRQQDAMEFLTFLLDLLDK--QCNIKVKYSYEPTEAIQIPL--------------EENDEPQDMLERIKAYFEGQTIEFKCANCKEKVTANKKPGFKSLPQTLILNPIRDPQTENLLPDEDENRSSFTPNQCSISQLIEMGFTQNASVRALFNTGNDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKRE-------VDEVSLTSMLSMGLNPNLCRKALILNNGDVNRSVEWVFNNMDDDGTFPEPEVPNEEALTAVICHKGYNDEKLVAA---DSIEDMKKNGYIY...................................................................................................... 798
7 -12.700[S] KOG2632 Rhomboid family proteins  ali follow..  9  288........................................................................................................................................................................................................................................................................................................................................................................................................QREASNQSSEDSRFPGRGRTLSTARDPTAPAGETDPNLHARLLEDSSSPDRLSDATVNTVADSRQAPIANAAVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQQ................................................................................................... 410
8 -11.400[T] KOG4361 BCL2-associated athanogene-like proteins and related BAG family chaperone regulators  ali follow..  11  25..............................................................EIRPGGMKRNPDLDPVGPPPPPMIRVRI----KYGAVYHEINISPQASFGELKKMLTGPTGI-HHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIMRKIAKTEKASKAISDISLEVDRLGGRVSAFEMVTKKGGKVTVIELLMNELIKLDAIVAEGDVKLQRKMQVKRVQNYVETLDALKVKNSM............................................................................................................................................................................................................................................................................................................................................................................. 227
9 -9.560[J] KOG0004 Ubiquitin/40S ribosomal protein S27a fusion  ali follow..  7  11..................................................................................................KTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK..................................................................................................................................................................................................................................................................................................................................................................................... 152
10 -9.200[S] KOG4463 Uncharacterized conserved protein  ali follow..  11  245.....................................................................................................................................................................................................................................................................................................................................................................................................RTENENQVENPVSNADANDSPTRQNARATAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIMQTSRAQAIQALSQ-TNDVQRAVELLLEQTAD................................................................................................. 371
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.