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Query: [R] KOG2893 Zn finger protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRYLast
1 -85.800[R] KOG2893 Zn finger protein  ali  100  1MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY 478
2 -22.400[O] KOG2231 Predicted E3 ubiquitin ligase  ali follow..  12  196.GDPDNRSHRPLCEYCNKRYVDRDELFRHLRREHYFCHFCDADYNDYADLAEHFRAEH---LCEEGKCAT-RNEIEYKAHVANVHGKSLNKQQAKQTGRSGQTEQGITSVRTRNDEHNDYQNDLPSITQRHVSIDAGNEEQFPTLRGASTAPSVSLVRPPPPSMRNLSGTSGLARTKENFPALGGGNGGGVTGPTSSSIAARAAQSQHPVAAVFKKPTSAAGSGSRSGPPGNGMLLHVSNRSAAVPKKAATPQVDFPALPGKGNKKNLRNLEEDMLPSGSPVPMANISAKHRSLADDYVSVASPSTFQKLQMVQKEEDEAKARQEALKKSAPKLTAAEFPSLGPSASASSSRTTAPKPSSGSPSLNWSKPANEKKQRELENRKAKVAPAPVLPSPTSKPAPKASNNNVQEQQANKKDKKQKDKKSNQENQPKTAKPKERNNNNEQKTNGAPSTPIRAPPGLKPGGPLKPPPGFVSN.. 693
3 -20.400[R] COG5236 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  11  213.GNSEGFKGHPMCAFCSKRFYSDDELYIHMRNQHEKCHICDKMFKDELELQAHILQEHGNILKGKPKFFQSELSTFISA-ERDDYDLPSISSLPGSSSGSRTDVRSASSPEESRLRLAERAKYYLENSKEDFNKFSSYNEDYSKGRLSAEKLLESYKLLFTKPNADVYLLIHNLAETFPKNSSKYNNLNAIYEQREQTLARQTSLPSLSSDSSLSMSIGRGHWGGTNDGGSAGAALGVRNIKNLPTLKSPSASYDPFATTVKKNTLRPVQNIKRTTPQSVSYRTSTNTVAFSPTYLESKKGSSSTSLNNSKDKLKSLNLPQLPPPKPKVQIPGLNRPQIADPKQWGKKSSTQDTNVHDNLRELNTTSGGNKKKGKQKQL................................................................................................... 633
4 -16.500[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  12  570VNEGEKELMKLWNLHVMRHFLDAK-IVRKNLYRNFILHMC--SLFD--GL------IAAETVYKTVQKLQGLLSKYAA---MQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRPPPPPPPQ.................................................................................................... 955
5 -16.300[KD] COG5189 Putative transcriptional repressor regulating G2/M transition  ali follow..  25  590...MDHEEQKPFC--CEKTYKNQNGLKYHRLHGHYRCEVCGKRYKNLNGLKYH--RGH.................................................................................................................................................................................................................................................................................................................................................................................................................................... 680
6 -15.000[K] KOG2169 Zn-finger transcription factor  ali follow..  6  427LCKTRTTPSR--CTHC---FDLLSYLMMNEKKPTWQCPVCSSNC-PYDRLIVYFLDM----LAKVDKNTT-----EVELKE-DG---DVIKEEAFCISDDDDDDVVPATVNGTASCSSTNGNGLANEAAKKKPADDDIITLSDDDDEELNRGIMNSLNDSFSPGRHTASAELAAQKTPPQQKKKTKDDDIEIITLDDTPPRPVAASANLPMRQMSQQNQMPVGSSPSGMASTQMGMNEGASKTIRDALNKIGEPMINQAPHFQMQNGLIGRNNQMVHMQQHHLQQQQQQQQSPQIMSPSFYAQQQMSNGDTNNIQPPRILSMAEIQANASRLLVNGHLMIDHSGVTMRNPRGS............................................................................................................................. 770
7 -14.400[R] KOG2785 C2H2-type Zn-finger protein  ali follow..  16  1........MATYCITCRVAFRDADMQRAHYKTDHTYCTVCSKKFASFNAYENHLKS-HVELEKKAVQAVNRKVEMMNEKNLEKGLGVDSVDKDAMNAAIQQAIKAQPSMSPKKAP........................................................................................................................................................................................................................................................................................................................................................................... 148
8 -14.000[R] COG5048 FOG: Zn-finger  ali follow..  21  541..YVKEMPDKTFCLFCTKTFKRRYNIRSHIQT-HYSCD-CDKAFVRNHDLIRH-KKSHQEKAYACP----GKK------FNR----EDALVVHRSR.............................................................................................................................................................................................................................................................................................................................................................................................. 629
9 -13.900[U] KOG4173 Alpha-SNAP protein  ali follow..  16  97YEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHYQCLVCTEKFKTSRDRKDHMVRMHLASAEAPGDSGERSEGEAMEICSEPVAASPAPAGERRIYRHRSVSELFLKPVLN.............................................................................................................................................................................................................................................................................................................................................................................. 239
10 -13.500[R] KOG3253 Predicted alpha/beta hydrolase  ali follow..  9  299.................RGDVDDPLLVIGQNSL--QCHP--EKIRAENSLVVGLTQVDRCIQDEIVDFL---TGVLTRAEGHMGSEPRDQDAEKKKKPRDVARRDLAFEVPERGSRPASPAAKLPASPSGSEDLSSVSSSPTSSPKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVLTHKQAQVPISSEPPEEGEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCAPSQGSAPEAAGGKPITMTLGQASAGAKELTGLLTTAKSSSSEGGVSASPVPSVVSSSTAPSALHTLQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGGLAKLASSLPGLAQISNQASGLKVPTTITLTLRGQPSRITTLSPMGSGAAPSEESSSQVLPSSSQR. 786
11 -13.100[O] KOG0802 E3 ubiquitin ligase  ali follow..  10  368MAKAKR------CFHCLRSW------LDQGLNEVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVPDSVENDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGRTGGLHLRTVSNTTNESLTNILAMAETVREVMPHVPDEIIFQVNFKCILD........................................................................................................................................................................................................................................................ 592
12 -12.900[K] KOG2482 Predicted C2H2-type Zn-finger protein  ali follow..  12  282..DWEEHPASAVCLFCEKQAETIEKLYVHMEDAHCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTFPTYENDTL-LCTLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQ....................................................................................................................................................................................................................................................................................................................................................................... 435
13 -12.600[S] KOG4623 Uncharacterized conserved protein  ali follow..  9  34...RSRYDARVNCWFCN-----GNVRVPYQDRNSWTCPSCEQ--FTKDGLCDQCNEAQRLKVEKLSQFEPKNES-ELKVYRER---ERHVNKVLHEKKKMVLSSKFLNYIIKGASLLKQPHFNRLAAAQKQF---------YDGLKFTRFTIALLLWSGYAMGIEFLDPYISGISFILVGSFVTLVLLATNRTNLLSQVNRDESACESFHRLCADECDDETLSMLSQQLSGYSDISNSNLSMRTASVCHSPAPTISQRTIQAPASLLSLDSLHLSKQRMEQQAWSSNYGDASTVVAPRVQPAMMFQQKPMRPLESQWYRHGQSNLAQGNTFTRSTQNLLMPSRLPSINRNVGGADVSAWVAANQSVNQDLCTANLMRHYEEKQQNQLSRTSSQSSGFESQPRPEAQCGTGAATVRDYGWSEARESQRNFAVFPPMPSPTPTITPSEYQYSRTALPQQQPTMQPGDLLRKWIEINSKSH 680
14 -12.500[TU] KOG3895 Synaptic vesicle protein Synapsin  ali follow..  11  310VATARLENQSAL--YCTIEYIDAKFSVHIQKGNNYKAFM---KTNQGSAMLITLTEKYKSWVDEISELFGGMEVCGLSVVAKDG-PSMAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGPPPIPERTSPAVGSIGRLSSRSSISEVPEEPSSSGPSTVGGEIANKKRGRTASETSSGSGPGSVPSSAGPGSGFSSSFLGKSTQPTQRPSEEPPAIPTTASSAVRPESSVSVSDSRNTDTLTERAGAGYQPVTNYEQQERVNPFDKEPSKSGSAASIHTSSSSSISSSSISSRINRNGNAIQSPPPPAGPPPPPPTNVTAVGSNANSSSGYRNSFSSSLSKDKTSYGNYGSTTSVETITRMDTNTTNIGATATEAGEASGVTAITNISNSDGIVAPTTGTITTSVTTNDWRSAIGMRSASVYSAPAAVTTVLPGDTSGYDSNSIASQGEGLNNPSDLPSYTRPS... 858
15 -12.400[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  9  3............CESCGVEFT----VFRRKRARYY-CANCIAS-------VFAQRPLSRTDLLKLK---------DLIFY-SKHISTEGCLEKEELVG-THVAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFFSNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQATTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSERVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELGAIGGISDESKANTDTNSS................................................................................................................................ 336
16 -11.900[TZ] KOG4035 Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover  ali follow..  10  1MLK---------ALY---DFQGEYFILYQTSARQWQVVSMKGNI----GFV-YVMKIKVEHISFLNSSIESLEKCTDH--------NGIMSKDELLDRLREKKHTMERLYAESSERDGDSSLSYSHSYSDKGSHRHSHPHPTQSQTQLHSQHRQHSPPPSGGSVGSQRLDMSKKSMSSPAVGSSCGLPQNQGMIESPSMGSMQFQGSSCTIQTPQQQQPLPAPPAPAPSPSAASATPTAASTSKAATGGDVAQDNSITSEPSETTTTTTTTSEDVVTTYKETSQMSTSQQHKPQNGSTASASISASASASALRSNGGNGKANGSATALHQELQQEEADSAPDKSDDASAVQSDDGCPANGDSADNSQALDSIDSPSHRQRGLSLGRIEEGATGGGQLKVESS............................................................................ 399
17 -11.900[R] KOG3608 Zn finger proteins  ali follow..  19  224LRRQPENNTNSFCAQCFKFFATKKLLKSHVVR-HYKCTMCDMTCSSASSLTTHIRYRHL-----------KDKPLKCSECDTRCVRESDLAKHVQIVHSKTV........................................................................................................................................................................................................................................................................................................................................................................................ 317
18 -11.800[K] KOG2150 CCR4-NOT transcriptional regulation complex, NOT5 subunit  ali follow..  9  48LKRKKREQIKSW----SPDIKDKDSLLDYRRSEKYK--AVEKKAYSNISLKK--RQYHQQQMELALRLLANEE--DINYF-VESNQDPDFVEDE-QSNEAIAHEVAQYFASQNAEDNNTSDANESLQDISKLSKKEQRKLEREAKKAAKLAAKNATGAAIPVAGPSSTPSPVIPVADASKETERSPSSSPIHNATKPEEAVKTSIKSPRSSADNLLPSLQKSPSSATPETPTNVHTHIHQTPNGITGATTLKPATLPAKPAGELKWAVAASQAVEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSALNTPKLSTSSLSLQPDNTGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSEHEVATTVNQNGPENTTKKVMEQKEEESPEERNKLQVPTFGVFDDDFESDRDSETEPEEEEQPSTPKYLSLEQREAKTNEIKKEFVSDFETLLLPSG.. 613
19 -11.600[R] KOG0562 Predicted hydrolase (HIT family)  ali follow..  10  358..KRISH----WNSFNTELFMPFQIAYMMLSVQ-LRCNQCEFVTNMLLDLKAHLYQHWQRK--------EDERDQKKKVDKIIQMISETKLDEAEAKPKLLNEEEPIQAQPVAAIAQYPNEHLGKPLTPQQQPGKQQAQNVYDKNINGPSVNMMNQNNPNNPFRNTPHLNRQSQKPPHPRSGPRGPMAPWTGPRFPCHQQQNRFRPPGFNACRQPYPPYHSGHQQFPNASSVGGGQTGLPGQGQGPRPKWNSNKIFNQQNRQNTVQAQPQAQNQQTNQQQIQNSNKNQTPKKKPWKNRLQPVGKVQNQGGANRDPAPPSNSKPS.......................................................................................................................................................... 685
20 -11.200[V] COG3183 Predicted restriction endonuclease  ali follow..  19  176.GKKILCYTTRYCQGCGFDFEKTRDYIEH----HVKCANCHRMI--------HRRKDSVLSLKELQELLLANKS.................................................................................................................................................................................................................................................................................................................................................................................................................... 279
21 -11.000[K] KOG2461 Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains  ali follow..  18  583..LRLHNGQKPYCDVCDAKFTQYVHLRLHKRLRPYSCGTCGKKYISPSGLRTH-WKTTMKDSMRDDL---MDIKGEIDEGSMSGSGYGNLGIFENTLNSELK........................................................................................................................................................................................................................................................................................................................................................................................ 689
22 -10.700[R] KOG4377 Zn-finger protein  ali follow..  21  398..SRKTSHFH--CRKCDYVCTDSNKVVAHRRLTHYHCVTCDGGVLSRAQLAAH-KHRTKQEADTTP............................................................................................................................................................................................................................................................................................................................................................................................................................ 493
23 -10.500[T] KOG0706 Predicted GTPase-activating protein  ali follow..  16  1MGDPSKQDIL--CFDCG--------------AKNFLCIDCHRSL----G--VHLSFIRSTELDQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSCVVPPLSPPPK...................................................................................................................................................................................................................................................................................................................................................... 147
24 -10.200[K] KOG4577 Transcription factor LIM3, contains LIM and HOX domains  ali follow..  12  44.....KVLDRHWC-YCKEDFPTQVVRKAQDFVYHFACIICNRQLATGD-ITAKQLETLKNKNSPKPARHVRE-----QLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPLLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPP........................................................................................................................................................................................................ 389
25 -10.100[K] KOG3815 Transcription factor Doublesex  ali follow..  22  1MNPRAPLQRTPKCARC-RNHGVLSWLKGHKRYCRFKCEKCRQRVMAA--VALRRQQANESL................................................................................................................................................................................................................................................................................................................................................................................................................................. 83
26 -10.100[R] KOG0490 Transcription factor, contains HOX domain  ali follow..  10  19.....NVLDRAWCVYCKNDFPSDLVRKARSKVFHFTCMVCNKQLSTGEELKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGPPSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAV.......................................................................................................................................... 401
27 -10.100[S] KOG4696 Uncharacterized conserved protein  ali follow..  13  4............CNICGETVTSEPDMKAHLIV-HIICPFCKLSGVNYDEMCFHIETAHFETVQYGTSDNKKDNTLQCGMEVNSSILSGCASNHPKNSAQNLTKDSTLKHEGFYSENLTESRKFLKSREKQSSLTEIKGS................................................................................................................................................................................................................................................................................................................................................... 145
28 -10.000[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  12  97VGN--------W-WTTDQDFFENRA---NGQSKGF----SVISLGS------------ESSLRAVLDQLPKK-----EMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGPAPPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQGMNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLT.................................................................................................................... 444
29 -9.940[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  9  339..LQNSANDDNICIICMDELNQQTWKNKNKKPKRLPCG--------------HI--LHLSCLKN-SQTCP-RLPV---------FDEKGNVVQTTFTSNSDITTQTTVTDSTGIATDQQGFANEVDLLPTRTTSPDIRIVPTQNIDTLAMRTRSTSTPSPTWYTFPLHKTGDNSVGSSRSAYEFLITNSDEKENGIPVKLTIENHEVNSLHGDGGEQIAKKIVIPDKF.......................................................................................................................................................................................................................................................... 547
30 -9.830[T] KOG0703 Predicted GTPase-activating protein  ali follow..  10  1MNEKKELNAR--CADCKTRWASVNLGI-------FICMQCHRSL----G--VHISKVRSATLDSMGNDKPNYDRVGIENF----------AKYEEKRWVSRGEKARSPPRVEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPASRTRNNVAATRINLPVPPQGPSQVIKPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNLTTQQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGTPNGVNQQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQS.................................... 466
31 -9.830[A] KOG3408 U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing  ali follow..  16  1MGRVARKRKH-YCIECARYFDSSQALLVHKKGKV-----------------------HKRRLKNLREEPYTQEEAEAA----VNIGQPKQSVASKLADNSNVVMAD.................................................................................................................................................................................................................................................................................................................................................................................... 124
32 -9.830[R] COG5112 U1-like Zn-finger-containing protein  ali follow..  16  1MGRVARKRKH-YCIECARYFDSSQALLVHKKGKV-----------------------HKRRLKNLREEPYTQEEAEAA----VNIGQPKQSVASKLADNSNVVMAD.................................................................................................................................................................................................................................................................................................................................................................................... 124
33 -9.740[O] KOG4628 Predicted E3 ubiquitin ligase  ali follow..  13  210LPKSKKLPVLRYCVICLEDFIEDRVLCSHP---HTHCPICKRKVFTKGE-----ARASRSRQPSLDNVTDTDDD-----------TTPLLQQQQSNGRQVGQVSSASSAGGAAGSSSSVAAAAVAGTTRHGTFRRGHAGRNPFEESQSSDDENALLASTVRPATSSGAHERINPFDRAPNLPAHLAEQLTESRRSVWSRINFASFFRRQPAVISVAAPPYLERVESGTSAMGLPVTGTIAVASPASNNILNPNLSGSFKDEDDMPPHRSIYEPIAISTPAADSATVDDSAFLQTPTQGGIGVAALPHSASDRQ..................................................................................................................................................................... 533
34 -9.600[A] KOG0150 Spliceosomal protein FBP21  ali follow..  16  1MTEYWKSNERKFCDFCKCWLSDNKASVAHESGRH-K-----------MNVAKRITDISRNSEKS----ERERQKMDAEIRKMEEAAMKSYAQDVHSRGDMTARSINTVMRATATAAASGGAHSFAG................................................................................................................................................................................................................................................................................................................................................................ 112
35 -9.540[K] KOG2462 C2H2-type Zn-finger protein  ali follow..  15  165YSMHVRTHNQGCCQFCGKRFSRPWLLQGHIRTKPFKCGVCEKAFADKSNLRAH-IQTHS-----------NTKPHTCARCGKAFALKSYLYKHEESSCMKNRGGVPGSGAASGNRP.......................................................................................................................................................................................................................................................................................................................................................................... 273
36 -9.510[R] KOG3138 Predicted N-acetyltransferase  ali follow..  11  1MNSNWDDPQGPCR-YCESPVEDDNYL--HIKC-EFTCVKCVLDSDLEPILTLYNLSIKRTHIGSVSGALSHNSP-GLDVFQENGTPRSVLKEYEKKQQLRLQMRIEKRLPAADETSCSSEISVADHAQDNPPLIKAEAEKPSSTEGCARTIPYMGRLPKIQTQPSPLSQETLPGPPILQENIAPPSQKEEEPQNQPMSMVQAGLMDFLAESLESDDFTMFGNLPGIMPPPLIGAGKNDFFMTEPLLHAPLNNEGLFDMDTNFAIPNTADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDYQPRIVQVTNYQAQEANESIKEEPLEEIMQDDDVTTNSKSSILEPCKPSGFVRQPRRNWPWLQEAQDPDDMAIPSEN................................................................................................. 476
37 -9.330[T] KOG4825 Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa)  ali follow..  15  783............CDHCKQVVE--SSLTEHKKDGFGKCYRCSEAVFKE--LPRHIKHKPEKLANRCPNFSPGEEAWKAHLMGPAGCTMNLRKTHILQKAPALQPGKSSAVAASGPLGSKAGSKIPTPKGGLSKSSSRTYAK.................................................................................................................................................................................................................................................................................................................................................. 924
38 -9.220[K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit  ali follow..  12  49LKRKKRDQIKTW----KEDVKDKQVLMTNRRLERFK--SVEKKQFSKEALTTERHEFHIANLENILKKLQNNE--DIKYY-VENNDDPDFIEYDTIYEDMGCEIQPSSSNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNSTLGTPTTHVSMKKKESENDSEQQLNFPPDRTDEIRKTIQHDVETNAAFQNPLFNDELKYWLDSKRYLMQPLQEMSPKMVSQLESSLLNCPDSLDADSP............................................................................................................................................................................................ 400
39 -9.110[R] KOG4433 Tweety transmembrane/cell surface protein  ali follow..  8  216VARRSRCTL--WCDFCGTPFESRDLVMQRMSQETYPHIDIQRTLNNLTTLSLDRRTIDMHYEEALRGLCGG---------GLLGL----ADSHAWIYLTKRPTLDADKSETAPLFPASNAPSASISPTAPLSTGTINRTLLHHQQASSGGGSGTLPGSGGGAGAGGGVGANGHNGVGPYRNGSAGLRQGLASPSSQSSHTSSTATYNNGTTSYHNSHQQHNNHLYSNHYSHSNNHYNNTQHRTNPAAGAVAAAVGVVSSGQRSPSPPPVYDLDAFHRTTSNRRRICQDPTMESSSSNTAQQQQQNLQLQQHQQQSNLINQNQSQSTLKNIFASATLPRSTGSSIRSVLSVQTSNAGICRSTGNGLDGDMVDDRDPR----------DVTNNSFNRFDPKYISIGPKAVRGQNNNLNIMSVAGGANKCATLRHVGRYGGSLKGVSAVNATPSPAAAPAVHSPNLRSAKTPSIATVSKDY 767
40 -9.080[R] KOG4403 Cell surface glycoprotein STIM, contains SAM domain  ali follow..  13  346.......ALQKWLYYNIKKQNAEKQL---LVAKE-GAEKIKKKRNTLFG-VAHSSSLDKQALSEVTAALRER---QIEIVNNPGIHSLVAALNIDPSWMGSTRPNPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHMSDRQRVAPKPPQMSRAADEALNAMTSNGSHRLIEGVHPGSLVEKLPDSPALAKKALLALNHGLDKAHSLMELSPSAPPGGSPHLDSSRSHSPSSPDPDTPSPVGDSRALQASRNTRIPHLAGKKAVAEEDNGSIGEETDSSPGRKKFPLKIFKKP.............................................................................................................................................................. 682
41 -9.050[TUZ] KOG0704 ADP-ribosylation factor GTPase activator  ali follow..  12  1MASPRPCDDNNFCFECE--------------ANNWICLECHRSL----G--VHLSFVRSVTMDELAKMKAGGNRKFAEFLQSQPDYKEKWTIQEKYNSRAAALFRDKVACEAEGREWSQSTSPAANYVPPTLGGMSSQSKP................................................................................................................................................................................................................................................................................................................................................. 148
42 -9.040[K] KOG0709 CREB/ATF family transcription factor  ali follow..  10  286..KRIRRKIR------NK-----------RSAQTSR----KRK---------------QDYIEQLEDRVSESTKENQAL--IERLSSE-VISQLKKLQAQLGQNAKRTTQAGRGNQDNQKVLECIEEACQPSATSMNSANSAQRAIAGVTAPSVVIPSGGPVMVSTNANRQMNRNAVLNHHNNSKYPASGNQNHHPIALEDLNHPPPTLQPKQSYQQQHQPSMYRRSDETIAMAMAKIGARK-GSSTSSSSASSVASSTSTSSATSPIYRTSRTLGAFEDQCDASSDDSNCANMPSLVPMKMSAQPPKRKIVTMNGQPRVTYRAVPASSVNVEQAQKVPQQKVQYVTMDRPIKYEVLNDYIKMEEESTIRLPNSWSTAGPRLHPQVNASSRTVRPLTVATPVHYNGPSAKKIKTQ............................................................... 686
43 -9.020[A] KOG2837 Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing  ali follow..  18  1MGKHEKGSSK---DLANR---KSKGL---QKLKFF-CQMCQKQCRDANGFKCHLTEAHQRQLLLFAEN-SNSRQFSNDFYGTKRVRANEVYNAFIKDKGHVHMNSTV................................................................................................................................................................................................................................................................................................................................................................................... 111
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.