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Query: [G] KOG3075 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSVEVTEKLast
1 -102.000[G] KOG3075 Ribose 5-phosphate isomerase  ali  100  1MAAGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSVEVTEK 258
2 -87.200[G] COG0120 Ribose 5-phosphate isomerase  ali follow..  33  3...........ERNTSTDSPEKRAAGIAAAG---LVSSGMLVGLGTGSTVAYTIKELGRRVREEG-----LDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQL-----DKLVPVEVLPFAKEPVVKKIRELGGKPQ---LRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQ 233
3 -11.000[KG] COG1349 Transcriptional regulators of sugar metabolism  ali follow..  16  57VLNKEESDPPIDHKTLINTHKKALIAAAAVK---YIHDGDSIILDAGSTVLQMVPLLSRF----------SNITVMTNSLHIVNALSEHGQLAENAFEQFSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMC-NAAREVILMADSSKF.............................................................................................................. 211
4 -9.400[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit  ali follow..  15  1.................MALTREQMAQRVARE---LKDGYYVNLGIGIPTLVANYVPEGIDVMLQSENGLLGMGAFPSEAEVDADMINAG-QSFAMIRGGHVDLTVLGAFEVDVRGNIVKGMGGAM-----LVAGAENIIVTMTHAS............................................................................................................... 147
5 -7.630[R] COG4106 Trans-aconitate methyltransferase  ali follow..  11  5...........AQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGP--GNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAAVLSQLMDQLESGGVLAVQ.................................................................................................................................. 128
6 -6.620[T] COG5635 Predicted NTPase (NACHT family)  ali follow..  9  43...........................VSLEDIAEIPCLVLLG-GVGKTH--ELEKLQRFTEETICEYSKVLGLNLRTFTNLKEDLFRDKTFSDWLEGHYHLHLFLDSLDEGLLNVKSLAIGLVDEFKKPKYRSHINRLHLRLTPSILEEALKALWEESNFAYELAPLRRIDVINAVEAEGFSSDDFLKAINQRDIVPLAIK---ISLGFLLNTYRRHNSQFPPEQKRYESYLEGC...................... 255
7 -6.360[P] COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase  ali follow..  13  22...............................................................................................................................................................SLVVHTLPEHLLTVKQQVSELRDVEIYG------------EDPQGKLVVVIETDRQGFITETIEHINNLPNVLNAFL...................... 86
8 -6.210[Q] COG4569 Acetaldehyde dehydrogenase (acetylating)  ali follow..  15  2.....................................SKRKVAIGSGNIGTDLMIKILRHGQHLEM----AVMVGIDPQSDGLARARRMGVALMNMPEFADIDIVFDAT------------SAGAHVKNDAALREAKPDIRLIDLTP............................................................................................................... 104
9 -6.160[C] COG3051 Citrate lyase, alpha subunit  ali follow..  14  262.........GGDATRMTTNPRELLIAKRAIEHSGYFYDGFSMQTGSGGASLAVARFLKEKMLRQDIRASFALMVDMHEQGLIDYLLDVQCFDSVAAGSLDRLDVVILSALEIDTQFNVRGASGGHC---DTAAAANLSIIVAPLVRGRIPTVVEKVTNVITPGSTIDV------------------------------LVTDQG--EAQLPVVEIEALQQRAELLDKTVAFVHDGSIIDVIKQV.............. 531
10 -6.140[J] KOG1466 Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3)  ali follow..  16  148.SAKSRLLERAEKFGEISCKARRIIAMLSQD---FIFDGCTI--GLSRVVLEILKTAAQNNKL-------FRVLCTEGGVLLSSELSKLDIPVKLLLDMDEVDMVFVGADGVVESGGIINMMGTYQIA--VAHSMNKPVYVAAESYKFARLYIEFGVKIPTKVEVERSARDYTPPQYLTL------------------LFTDLG----------VLSPSVVSDELIQL.............................. 360
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;