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Query: [O] KOG3090 Prohibitin-like protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNFKNVKVPKGPGGGVIAAVVIGGLSLYGATHTLYNVDGGHRAIVFNRLVGIKDKVYPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRSLGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDVSITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAIANNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLDVKPKKLast
1 -95.700[O] KOG3090 Prohibitin-like protein  ali  100  1MNFKNVKVPKGPGGGVIAAVVIGGLSLYGATHTLYNVDGGHRAIVFNRLVGIKDKVYPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRSLGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDVSITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAIANNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLDVKPKK 286
2 -69.000[O] KOG3083 Prohibitin  ali follow..  41  1.................................MAAKMFEFIGKF-GLALVVAGGVVNSALYSVDAGHRAVVRGVQDIVPRNVPVITGSKDLQNVNLTLRIIFRPVASQLPHIFTSSGEDHDERVPPSITNKILKSVVARFEAGELITQREQISRQVSDDLTEPAATFGLILDDVSLTYLTFGKEFIEAVEAKQIAQQEAERARFVVEKAEQQKKAAIISAEGDSKVAELITNSLATADALIELRKLEAVEDITYQLLRSRNITYLRAGQMPLQLR.......... 248
3 -50.900[O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs  ali follow..  16  6................IAVVAFVVVVILVLFAGIKTVPQGYRYTVE-RFGRYT-RTMEPGLNLIVPFIDRISKLSVMEQVLDVPTQEVITKDNASVSADAVAFYQVLNAAQAAYQVAN---LENALLNLTMTNIRSVMGSMDLDELLSNRDTINDRLLHVVDEAANPWGIKITRIEIKDIAPPKDLVDAMARQMKAEREKRAQ---VLEAEGSRNAQILRAEGAKQSAILQAEGQREAAYREAEARERLAEAEAKATRMVSEAI...................... 246
4 -43.500[C] KOG2621 Prohibitins and stomatins of the PID superfamily  ali follow..  17  41...............GLSWIMVISTFPVSIYFCMKVVQEYERAVIFRLGRLIGGGAKGPGIFFVLPCIESYTKVDLRTVSFSVPPQEILTKDSVTTSVDAVIYYRISNATVSVANVENAHHS---TRLLAQTTLRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPIQLQRAMAAEAEATR--------------EARAKVIAAEGEQKASRALRDAIAQSPAALQLRYLQTLNSVAREKFD........................... 270
5 -43.100[C] KOG2620 Prohibitins and stomatins of the PID superfamily  ali follow..  13  92...................DFNSYHINPPSNWGIRIVPERKACVI-ERFGKFH-TTLPAGIHFLVPFVDRIAYVSLKEEAIPIGNQTAITKDNVSIHIDGVLYVKIVDPKLASYGVENPIYA---VMQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDIMPPNGVRVAMEMQAEAERKKRAQ---ILESEGERQAHINRADGKKSSVILESEAAMMDQVNRAQGEAEAILARAQATAKGLAMV...................... 329
6 -31.200[S] COG2268 Uncharacterized protein conserved in bacteria  ali follow..  13  15...............AIVAVIVLLIIGIIFARLYRRASAEQAFVR----GLGGQKVVMSGGAIVMPIFHEIIPINMNTLKLEVSRSLITKDRMRVDVVVAFFVRVKPSV-TLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELESVSLTNFNQTSNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAK........................... 270
7 -16.400[S] COG4260 Putative virion core protein (lumpy skin disease virus)  ali follow..  11  43............................ITDGSIVHVYENMMMILVDG-GKIIDYTAEPGYYTVTPQKQEVYYVNLQEIK---TATPLQYFDNFYNAELFLRTHKITDPLAFYANVIPKQEINDQYLAEFLTALNTSINQYRVSFLTSKSMELSKYMASVLDEDKQLRGMEIVSVAVASISYTDDSQKLINMRNQGAMLGDPSIREGFVQGAVARGLEAAGSNTGGAT.......................................................... 290
8 -8.260[S] COG4864 Uncharacterized protein conserved in bacteria  ali follow..  16  139.....................................................................................AGVAMDGIEVKAKARITVRANIERL------VGGAGEETIVARVGEGIVSTIGSSDNHKKVLENPDMISQTVLGKGLD--SGTAFEILSIDIADVDIGKNIGAILQDKNIAQAKAEERRAMAVAQEQEMRARVEEVEAEAEVPLAMAEALREGNDYMNIKNIDADTEMRDSFGK........................... 319
9 -7.670[K] COG1758 DNA-directed RNA polymerase, subunit K/omega  ali follow..  10  1............................................................................................................................MARITAEDCNKIIPDRFRLVVLATRYALLNYKVETNQIKRDKPPVIALRRIAAGKVSVAQLEQDLINSLRTRTMIEPLVNQDESEAVEEKFEYLPEVYIGEDYSDLDDQIFIDEN............................................... 119
10 -6.580[S] COG5343 Uncharacterized protein conserved in bacteria  ali follow..  10  8..................................................................................................................................QKDIPAIADDYVLGLL-SEAAAIETATERELRAAIAASRERFLPLSVAPAAVNSELWSNIESRLPPQAKFTANKSTRTANDNRKNGWRSIAVSAIAATLVLAAGLTFSLT--RTTEPLVIAVLVNEAGEVQAVVEDFGNEKATVRMLADFAVPQDK 166
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.