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Query: [U] KOG3103 Rab GTPase interacting factor, Golgi membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDASYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLEELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLSGKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVVLSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYPCAVLYGGFALITIYLast
1 -95.800[U] KOG3103 Rab GTPase interacting factor, Golgi membrane protein  ali  100  1MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDASYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLEELGINPNHIFQKTLAVLNPLRGTDQQILQDTDMAGPLVFCLTLGGFLLLSGKVTFSYIYGIGVMGCIFFYCLLSLMVSRSQVTFGAVASVLGYCLLPMVVLSGINILITIQGTLGLIVSGISIFWCAISASKLFATAFSMDHQQLLIAYPCAVLYGGFALITIY 264
2 -81.500[U] COG5080 Rab GTPase interacting factor, Golgi membrane protein  ali follow..  34  1......................................MAYYNNPANLQYYDYSYTADNSFNTQSRAAGFYDEPLHEPLSQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILFCLLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMS-AKNLFFTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITVF 225
3 -70.300[S] KOG2946 Uncharacterized conserved protein  ali follow..  19  3...........................................................EDVNTSPSLEGDMSIPGKRTTTATSASGVPEYNTLDEPIRETVLRDIRAVGIKFYHVLYPKE--KSSLLRDWDLWGPLVLCTFMATILQGSNGPEFAQVFVIVWIGAAVVTLNSKLL--GGNISFFQSVCVLGYCLTPVAISLIVCRVILLATFLRFVTTTIGFAWATYASFVFL-GQSQPPHRKPLAVYPIFLFFFIISWLVLS 216
4 -24.600[S] KOG3114 Uncharacterized conserved protein  ali follow..  12  6.GSYTNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDADVLYALLANLIDFQPVADTFSRPVNGTTDEPQSSGWLH---YKPYFDVDTSDVVERLKESLFPFRGTFTEKTANPDLYGPFWICTTLIFVAASIGTFVAGVFYGYVTIVPLALYVVLKYF--SAPSGLVQLFCLYGYSLFVFIPALCLSVV-PLEIFRWVIAGLAGFMSATFVALNLKAHINSAGERWFLIVVSIFLLQLALSVVLKL 291
5 -21.800[S] COG5197 Predicted membrane protein  ali follow..  11  7AYATSEQNGVNDRFSHTPQQQRPMQIPRNTPVNGQGNANMNANVNGSGGGFPFQDPRGSMAFQLGQSAFSNFIGQDNFNQFQETVNKATANAAGSQQISTYFQVSTRYVINKLKLILVPFLNGTRDDVNSPDMYMPIMGLVTYILIWNTQQGLKLSSTLAFVCLDLLILKLGLYLLIKIPSFSLVELLCYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVISKSTVKKCNYFLFVYGFIWQNVLMWLMG.. 314
6 -17.500[S] KOG3094 Predicted membrane protein  ali follow..  11  59.....................................................................................................FQVNDQYVRNKLKIVLLPFLHRGIYDINAPDLYIPLMAFGTYVVLAGLSLGLYFVKGMVGWFLQVMLLKITLLSLGS-GEAPLLDIVAYAGYTFTGLCLAVLGKIIWGYSYYVLIPWTCLCTGVFLVKTMKRVLRSYDSSRHHYLLIFVALAQFPLLIWLG.. 251
7 -11.700[S] COG2881 Uncharacterized protein conserved in archaea  ali follow..  11  3....................................................................................................................................LKLSQALPESLKSFFIAGAYIQLVSTFLGFFATWLIIAAVMHGLSADGRGEFRRTFEFAGYGFMLSLLGSAVTIPVSLKYVSAIFLNLAVTAWSFLIWTFALKNARNVELKQAAVCIPTAIVYQVMALVRLL 174
8 -10.300[T] KOG2322 N-methyl-D-aspartate receptor glutamate-binding subunit  ali follow..  7  6.LSVANKAPGTEGQQQVHGEKKEAPAVPSAPPSYEEATSGEGMKAGAFPPAPTAVPLHPSWAYVDPSSSSSYDNGFPTGDHELFTTFSWDDQKVRRVFVRKV-LLIQLLVTLAVVALFTFCDPVKDYVQAWNLILLTVFTLSMAYLTGMLSSYYNTTSVLLCLGITALVCLSVTVFSFQTKFDFTSCQGVLFVLLMTLFFSGLILAILLLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYIFGALNIY---LDIIYIF 304
9 -9.130[S] COG4040 Predicted membrane protein  ali follow..  12  3.............................................................................................................................................................IMLIQITGIIVVLMALRTLLAQDRAERLLYLNAMSFGISAMIALYV-------GTAFGAVLATVYFVASTITSNAIAHTLDRVGEEMVI.................. 84
10 -8.960[R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding protein  ali follow..  10  1MDHHQPGTGRYQVLLNEEDNSESSAIEQPPTSNPAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFN------------WLGFCLSFCITNTIAGR-----YGAICGFGLSLIKWILIVRFSDLWWIFLVLGLLLFFRGFV--NYLKVRNMSESMAAAHRTRYFFL............... 241
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.