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Query: [R] KOG3116 Predicted C3H1-type Zn-finger protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQCRNMSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSDSESDSEASVFETDSDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKRRLast
1 -105.000[R] KOG3116 Predicted C3H1-type Zn-finger protein  ali  100  1MQCRNMSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKRELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSDSESDSEASVFETDSDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKRR 280
2 -12.000[S] KOG4610 Uncharacterized conserved protein  ali follow..  10  360......................................................................................................................KKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSD 521
3 -10.200[S] COG5291 Predicted membrane protein  ali follow..  11  180............................................................................................................IVVGHLFH--RWGRDILSTPCWVKKLFNEHPSSCCKARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESECS........ 348
4 -9.860[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  10  490..............................................................................................KQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDT. 674
5 -9.660[OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger  ali follow..  12  164........................................................................................................CYNCGGKGHFGDDCKEKRSSRVPNEDGSAFTGSNLSEYYRHMNRNSDENEDYQFSESIYDEDPLPRPSHKRHSQNDHSHSGRNKRRASNFHPPPYQKSNVIQPTIRGETLSLNNNISKNSRYQNTKVNVSSISENMYGSRYNPSTYVDNNSISNSSNYRNYNSYQPYRSGTLGKRR 344
6 -8.340[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  13  397...............................................................................................................................................EQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD.. 531
7 -7.760[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  8  311..................................................................YQSGTSLWKIWRNNKQLDDTLVTVTVEQLQNSANDDNICIICMDEGHLHLSC---KNWMERSQT------PICRLPVFDEKGNVVQTTFTSNSDITTQTTVTDSTGIATDQQGFANEVDLLPTRTTSPDIRIVPTQNIDTLAMRTRSTSTPSPTWYTFPLHKTGDNSVGSSRSAYEFLITNSDEKENGIPVKLTIENHEVNSLHGDGGEQIAKK 540
8 -7.510[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  18  180.......................................................................................................................................................................LRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292
9 -7.440[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  14  193.........................................................................................................................................................DSDSEEEEVTKKEKPRLTSRRRSRSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGLAPLE 319
10 -7.360[P] KOG4505 Na+/H+ antiporter  ali follow..  10  500......DADISTVSLPEAAHLREERAESPRGGHYDAEEFPSEDYESRQPRRSNEEDREEEMNPGDETYLIGEDLVVEDSQGNIISHTSSRDANGPSIDEKLAQ---------------GDPKAKSFGRKFRSFLRRSYDTFQRNLHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSESEDDNIPRPGIVPFYNENNESSSDTRNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNEAQHRPNIRFLELTRAW 758
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;