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Query: [S] KOG3140 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKGRVAERSQLGAHHTTPVGDGAAGTRGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFELast
1 -89.300[S] KOG3140 Predicted membrane protein  ali  100  1MAKGRVAERSQLGAHHTTPVGDGAAGTRGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFE 291
2 -55.700[S] COG0398 Uncharacterized conserved protein  ali follow..  19  50...................................................................................................QGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMAGAALCFFIARVMGREVVEKLTGKT--VLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFW------FVTGLFILFALTVVIFMAKKIWLERQKR 233
3 -29.300[S] COG0586 Uncharacterized membrane-associated protein  ali follow..  14  20.....................................................................................................PEGFFAAAMLPATLVIIFVETGLLFPLLPGESLL-FTGGLLIDIWVLSPSVAVVAVLGDQIGYLIGRRIGPALFKKENSRKQHYVTESHAFFEKHGRWTIILARFLPFM--TFTPVIAGLSYMSYPLYLGFDIVGGILWGGGVTVAGYFLGNVPFVRQNLEKIILGILFVSLLPALIAAWHGYRSQSRTA 214
4 -24.300[S] COG1238 Predicted membrane protein  ali follow..  10  1..............................................................................................MGFSDDEGQAMADLAVYAG--LFLTAFIAATILPMQSEAALGLILLKSQPVWLLVATASVGNVAGSFANWLLGCGIERFRHERWFPVGEAALQRAQNWYRRYG-KWSLLLSWAPLI-GDPLTVAAGIMKEPLPVFLLLVTIAKVGRYVVLALLTLNF........................................ 154
5 -9.460[S] COG2426 Predicted membrane protein  ali follow..  12  1...........................................................................................................................MPFSELRGAIPLALYFG--FSPAEAYLLSVLGNILPVPFLLLFLDYLVRELLARIYRRVVERVERRKGVVERYGYLGLTIFVAIPLPVTGAWTLLAFLLQLNRLKAFLFISAGVCIAGVVVLLASIGIIRL..................................... 136
6 -8.850[S] COG3610 Uncharacterized conserved protein  ali follow..  10  10...................................................................................................................................QLVLSYVATVTFAIITNLNACGITGTFGWMAYWTLMQMDSGTGASSLAGA--------------------FVVAI-------LSHFFAKHKKMPITIFNVPGIVPLVPGGLAYQAVRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRAFRG 147
7 -8.280[U] COG5080 Rab GTPase interacting factor, Golgi membrane protein  ali follow..  12  74.........................................................................................KTTHVLNPFKHVDVHIMDDTDMAGPILFCLLF----------STFLSLHGRSHFGYIYGIAL------LGSLSLHFVLRLMSAKNLF---------------------FTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITVF............. 225
8 -8.240[O] KOG3359 Dolichyl-phosphate-mannose:protein O-mannosyl transferase  ali follow..  11  1MSSSSSTGYSKNNAAHIKQENTLRQRESSSISVSEELSSADERDAEDFSKEKPAAQSSLLRLESVVMPVIFTA------------LALFTRMYKIGINNHVV--WDEAHFGKFGSYYLRHEFYHDV---PLGKMLVGLSGYLAGY---VKMRLFNASFSALLAYFTAKAIGFSLPTVWLMTVLVLFENSYSTLGRFILLMLLFFTVASFF-LLITGISLGCTSVKMVGLFIITMVGIYTVIDLWTFLADKSMSWKTYINHWLARIFGLIIVPFCIFLL............. 302
9 -8.160[U] KOG3324 Mitochondrial import inner membrane translocase, subunit TIM23  ali follow..  1MADPMNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVG-LMFAAMESGVTYM-SLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAV------------------------------AGRRIVKRFVPI.................................................................................. 188
10 -7.720[P] KOG1418 Tandem pore domain K+ channel  ali follow..  112TPEQRNGFYSTPLGPAPSEYHFPPGSPQFRESTIREEFKQQYRETWGHWFVRVGKFLYKLLGIQYMLLALMILGYACLGGYIFLTLEYDQQQLDLEVEKQVRLSESTLLAENLL---ITKAFIERSIKVERDIRGEGWR---YGTNLGRVATIIYGLIGIPLMLFVLKIFGE-HSIKWAQKVRYSIRRCVKRCFRR-VKWALFIVFFFMVVCSLIDFLTAF----YFFFVSLSTIGF----------GDVIPEHPRTACGNGLLEIKICYISVMINGALKMSGDAVNF... 443

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.