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current user: public |
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Query: [S] KOG3140 Predicted membrane protein, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 | |||||||
# | Score | Template | Links and tools | %id | First | MAKGRVAERSQLGAHHTTPVGDGAAGTRGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFE | Last |
1 | -89.300 | [S] KOG3140 Predicted membrane protein | ali | 100 | 1 | MAKGRVAERSQLGAHHTTPVGDGAAGTRGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFE | 291 |
2 | -55.700 | [S] COG0398 Uncharacterized conserved protein | ali follow.. | 19 | 50 | ...................................................................................................QGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMAGAALCFFIARVMGREVVEKLTGKT--VLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFW------FVTGLFILFALTVVIFMAKKIWLERQKR | 233 |
3 | -29.300 | [S] COG0586 Uncharacterized membrane-associated protein | ali follow.. | 14 | 20 | .....................................................................................................PEGFFAAAMLPATLVIIFVETGLLFPLLPGESLL-FTGGLLIDIWVLSPSVAVVAVLGDQIGYLIGRRIGPALFKKENSRKQHYVTESHAFFEKHGRWTIILARFLPFM--TFTPVIAGLSYMSYPLYLGFDIVGGILWGGGVTVAGYFLGNVPFVRQNLEKIILGILFVSLLPALIAAWHGYRSQSRTA | 214 |
4 | -24.300 | [S] COG1238 Predicted membrane protein | ali follow.. | 10 | 1 | ..............................................................................................MGFSDDEGQAMADLAVYAG--LFLTAFIAATILPMQSEAALGLILLKSQPVWLLVATASVGNVAGSFANWLLGCGIERFRHERWFPVGEAALQRAQNWYRRYG-KWSLLLSWAPLI-GDPLTVAAGIMKEPLPVFLLLVTIAKVGRYVVLALLTLNF........................................ | 154 |
5 | -9.460 | [S] COG2426 Predicted membrane protein | ali follow.. | 12 | 1 | ...........................................................................................................................MPFSELRGAIPLALYFG--FSPAEAYLLSVLGNILPVPFLLLFLDYLVRELLARIYRRVVERVERRKGVVERYGYLGLTIFVAIPLPVTGAWTLLAFLLQLNRLKAFLFISAGVCIAGVVVLLASIGIIRL..................................... | 136 |
6 | -8.850 | [S] COG3610 Uncharacterized conserved protein | ali follow.. | 10 | 10 | ...................................................................................................................................QLVLSYVATVTFAIITNLNACGITGTFGWMAYWTLMQMDSGTGASSLAGA--------------------FVVAI-------LSHFFAKHKKMPITIFNVPGIVPLVPGGLAYQAVRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRAFRG | 147 |
7 | -8.280 | [U] COG5080 Rab GTPase interacting factor, Golgi membrane protein | ali follow.. | 12 | 74 | .........................................................................................KTTHVLNPFKHVDVHIMDDTDMAGPILFCLLF----------STFLSLHGRSHFGYIYGIAL------LGSLSLHFVLRLMSAKNLF---------------------FTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITVF............. | 225 |
8 | -8.240 | [O] KOG3359 Dolichyl-phosphate-mannose:protein O-mannosyl transferase | ali follow.. | 11 | 1 | MSSSSSTGYSKNNAAHIKQENTLRQRESSSISVSEELSSADERDAEDFSKEKPAAQSSLLRLESVVMPVIFTA------------LALFTRMYKIGINNHVV--WDEAHFGKFGSYYLRHEFYHDV---PLGKMLVGLSGYLAGY---VKMRLFNASFSALLAYFTAKAIGFSLPTVWLMTVLVLFENSYSTLGRFILLMLLFFTVASFF-LLITGISLGCTSVKMVGLFIITMVGIYTVIDLWTFLADKSMSWKTYINHWLARIFGLIIVPFCIFLL............. | 302 |
9 | -8.160 | [U] KOG3324 Mitochondrial import inner membrane translocase, subunit TIM23 | ali follow.. | 9 | 1 | MADPMNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVG-LMFAAMESGVTYM-SLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAV------------------------------AGRRIVKRFVPI.................................................................................. | 188 |
10 | -7.720 | [P] KOG1418 Tandem pore domain K+ channel | ali follow.. | 8 | 112 | TPEQRNGFYSTPLGPAPSEYHFPPGSPQFRESTIREEFKQQYRETWGHWFVRVGKFLYKLLGIQYMLLALMILGYACLGGYIFLTLEYDQQQLDLEVEKQVRLSESTLLAENLL---ITKAFIERSIKVERDIRGEGWR---YGTNLGRVATIIYGLIGIPLMLFVLKIFGE-HSIKWAQKVRYSIRRCVKRCFRR-VKWALFIVFFFMVVCSLIDFLTAF----YFFFVSLSTIGF----------GDVIPEHPRTACGNGLLEIKICYISVMINGALKMSGDAVNF... | 443 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30. |