FFAS03 results for KOG3283

Query: [J] KOG3283 40S ribosomal protein S8, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 .`
#	Score	Template	Links and tools	%id	First	`MGTFSIPFLSRISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA`	Last
1	-126.000	`[J] KOG3283 40S ribosomal protein S8`	`ali`	100	1	`MGTFSIPFLSRISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA`	219
2	-40.200	`[J] COG2007 Ribosomal protein S8E`	`ali follow..`	14	116	`......KYSVPLPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGF-TRRPVKYERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSELGLV---------------------------------------------TSGGKVVWGKYAQITNNPELDGCVNALLL.......................`	259
3	-36.400	`[R] KOG3163 Uncharacterized conserved protein related to ribosomal protein S8E`	`ali follow..`	16	118	`.......FSVPLPKVRGISEEEMFKVIKTGKSRSKSWKRMITKHTFVGEGF-TRRPVKMERIIRPSALRQKKANVTHPELGVTVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVSELGMV---------------------------------------------TAGGKVVWGKYAQVTNEPDRDGCVNAVLL.......................`	260
4	-5.740	`[R] KOG3005 GIY-YIG type nuclease`	`ali follow..`	14	1	`METFI------LSSDS-SKRRTIEGRSFSGDKKIRFSFGASNMSQDTTQEIIPEDTDTV-PALSGKFDSKTPKSVRRRSVSMSCFTPIVETINQPPTNQACSSFLQKEYNFHDLSSDEEGG----------GGAGCSKDEDKIIEDNLNLRALLSPEKKKRKEKIEEVQNEFYGVYCLISRSDRPCYKNRC--YI--GYTVDPNRRIMQHNGGRDKGGA`	215
5	-5.720	`[S] COG2926 Uncharacterized protein conserved in bacteria`	`ali follow..`	19	16	`..................................................................................................................................VRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGD-DRVDDYIIKNADLSKERRELSKK........`	97
6	-5.490	`[K] KOG1318 Helix loop helix transcription factor EB`	`ali follow..`	18	120	`................................................................................................................................LPMKREITETDTRALAKERQKKDNHNLIERRRRYNINYRIKE----GTLIPKSNDPDMRWNK--GTILK-ASVE-YIKWLQKEQQR.....`	198
7	-5.180	`[J] COG4830 Ribosomal protein S26`	`ali follow..`	12	2	`................................................TQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAI--------KIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK................................................`	117
8	-5.110	`[K] COG1396 Predicted transcriptional regulators`	`ali follow..`	17	3	`...................................................................................MRLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAA-LNVQVEELFSEESDGVDGYSIVRRDQRKSLSSGDDGPAYASLAQQIGARALLPFIVHPPRHLGEEFIFVHEGQEVDFMNQRIILERGDAL...`	151
9	-5.040	`[J] KOG1768 40s ribosomal protein S26`	`ali follow..`	11	2	`................................................TKKRGNNGRAKKGRGHMQPIRCRNCARCIPKDKAIKKFIIHNIVEAAAVRDISEASVFDAYVL--------KLYVKLHYFLSCAVHSKVVRNQSCVARKDQTPPPRLRPAGAALQPPPK....................................................`	113
10	-4.990	`[R] KOG0489 Transcription factor zerknullt and related HOX domain proteins`	`ali follow..`	15	302	`.....................................................................................................................................GMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLE--LEREFHAKKYL----SLTERSQIATSLKLSEVQVKFQNRRAKWKRVKAGLTS`	383

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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