FFAS03 results for KOG3306

Query: [S] KOG3306 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 .`
#	Score	Template	Links and tools	%id	First	`MTMTSIIRSSPTLAFIVLQICFIFFASTFPCSSGSEDSYTITGRVKIPPSNVIGHIAKFSNVKVILNGGQKITFLRPDGYFTFHEVPAGTHLIEVSAMGYFFSPVRVDVSARHRGKVQATLTETRRSLTELIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVPSLTSLLPGAGASR`	Last
1	-83.400	`[S] KOG3306 Predicted membrane protein`	`ali`	100	1	`MTMTSIIRSSPTLAFIVLQICFIFFASTFPCSSGSEDSYTITGRVKIPPSNVIGHIAKFSNVKVILNGGQKITFLRPDGYFTFHEVPAGTHLIEVSAMGYFFSPVRVDVSARHRGKVQATLTETRRSLTELIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVPSLTSLLPGAGASR`	198
2	-24.200	`[S] COG2512 Uncharacterized membrane-associated protein/domain`	`ali follow..`	10	1	`MDLLMEMNLIICIAALLTLLASASLALGVPFLEDNNVTATVHGATYAKD-----TLELLNDTVISINSTPSQSMVAKDGIYSF-ELAPGDYAITARYYRNNSKETTFKIEGEGNYVFDLLLYPVSEYPVTEPIQD...............................................................`	136
3	-9.980	`[S] COG3330 Uncharacterized protein conserved in bacteria`	`ali follow..`	17	335	`..................................ADAELIVYGATE-------------PDATVTIGGRPIK--LNEDGTFRFQSFQDGLIDYPIVAVGEQTRNVHMKFTRETPSRNTNTKEEAVPE.......................................................................`	416
4	-9.560	`[R] COG5643 Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E`	`ali follow..`	12	1	`MK----MRR-------LFMVSVLFLLAMLTGSVAAADNATCEVGVLVSYQYSDDNGRINPTLEITDSGTGIETYDPSSGYTKLSNISAANLTLTVRAPGYVTVERRLNLTPNPMDPRHTGYYASINLVLNATEPYRIGRELTEKADKLLNFTGKGEVL----VITTAGLVKYHNMTTEDVLEGILNRGGGLISYGRAN`	191
5	-9.470	`[M] COG4932 Predicted outer membrane protein`	`ali follow..`	15	1279	`..............................VEKVSKTNTAKTGTVVLTKKDS-ATNAELADATFELRNESENLVTDDNGEISVADLAPGDYKLETKAPGYQLTPVNFTIDFNQSEAAKVSKINTAKT.......................................................................`	1383
6	-9.030	`[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit`	`ali follow..`	17	54	`.............................YNDKAHGERITIKGRVIDG------MGAPLRDALVEIRGWGRCPSNMETGEFIFETIKPGRVPFRDG--RLMAPHVTLWIVARG.....................................................................................`	152
7	-8.570	`[S] COG4704 Uncharacterized protein conserved in bacteria`	`ali follow..`	11	1	`.....MRKKWAVSLILLTTLGNLAWSWSARANFNGKLTVEIQGQVCSSQGFPGDRKRVFDRQCTQINETPL--------KLTFNNLKAGTYAVAA.......................................................................................................`	93
8	-8.240	`[S] COG3126 Uncharacterized protein conserved in bacteria`	`ali follow..`	11	1	`MKPWQPKALWQIVGGAALAVSLT-APISTATVAASVAQSTVHGTVNIRERVALPPD---AVVTVTLSDISLAKAVRTEGKYSLP--PNARVIVSAAIT-FITDTIQEVINRGAGTQADLLLVPVPSV.......................................................................`	159
9	-8.070	`[P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid`	`ali follow..`	7	10	`LSKAFLMRRAFQRRILPHSLAMALSLPLAGYVQAQEVEFDIPPQ---ALGSALQEFGRQADIQVLYRPEEVRNKRSSKGKLEITELLRGT--ASVDFQGNAITISVAEAADSSVDLGATMITSNQLG------TITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTD`	203
10	-7.780	`[P] COG5266 ABC-type Co2+ transport system, periplasmic component`	`ali follow..`	10	160	`.........................IVPLDNPANIHVGERFKVRVL--------RGEPLPNATVTAEAQAFSDSTDDKGEVDIIPLRQGFWKANVEHKT-NYSTLTFQIGHSH.....................................................................................`	267

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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