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Query: [R] KOG3339 Predicted glycosyltransferase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTAYLASLVLIVSTAYVIRLIAILPFFHTQAGTEKDTKDGVNLLKIRKSSKKPLKIFVFLGSGGHTGEMIRLLENYQDLLLGKSIVYLGYSDEASRQRFAHFIKKFGHCKVKYYEFMKAREVKATLLQSVKTIIGTLVQSFVHVVRIRFAMCGSPHLFLLNGPGTCCIISFWLKIMELLLPLLGSSHIVYVESLARINTPSLTGKILYWVVDEFIVQWQELRDNYLPRSKWFGILVLast
1 -98.000[R] KOG3339 Predicted glycosyltransferase  ali  100  1MKTAYLASLVLIVSTAYVIRLIAILPFFHTQAGTEKDTKDGVNLLKIRKSSKKPLKIFVFLGSGGHTGEMIRLLENYQDLLLGKSIVYLGYSDEASRQRFAHFIKKFGHCKVKYYEFMKAREVKATLLQSVKTIIGTLVQSFVHVVRIRFAMCGSPHLFLLNGPGTCCIISFWLKIMELLLPLLGSSHIVYVESLARINTPSLTGKILYWVVDEFIVQWQELRDNYLPRSKWFGILV 237
2 -13.200[M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase  ali follow..  18  2....................................................KNKKLLVMAGGGGHVFPAIAVAQTLQKQEWDICWLGTKDRME------AQLVPKYGIPIRFIQISGLRGKGIKALLNAPFAIFRAVLQAKKIIQEEK------PDAVLGMGGYVSGPAGVAAKLCGV--------PIILHEQNA----AGLTNKLLGKIATCVLQAFPTAFP----HAEVVGNPV 160
3 -9.480[S] COG1817 Uncharacterized protein conserved in archaea  ali follow..  7  1......................................................MKVWIDIMNSPHAHFFKGIIRELEKRGFE--VLVTTREFDGLTQILDML---------GIDYISIGKHGGATLEGKLLASAERVYKLSKLI------IEEKPDLAIYKNN-----------PEAPRIAFGLKIPSIGFVD---NETAVPQNKLMFPFTNRLLYPKPIDAYELLRCGADPNSLR 152
4 -8.740[M] COG0381 UDP-N-acetylglucosamine 2-epimerase  ali follow..  15  2....................................................KKLKVMTVV---GTRPEIIRLSRVIVACDKHFQHILVHTGQNYDYELNEVFFHDLGIRKPDYFLNAAGKTSSATIGNVIIAV-------------DQLLEETQPEALLVLGDTNSCLAVLPAKRRKI--------PTFHMEAGNRCFDMRVNRRIVDHTADINLTYSTIARDYLPDLIIKTGSPM 172
5 -7.310[R] COG4671 Predicted glycosyl transferase  ali follow..  13  5................................................SPRLNDARILMYSHDSGHLRRCRTIAHALVEDYRGLNVLIISGATIAGA-----FDYRARVDFVKIPSVIKLRNGEYTSMDRHIDLQETLKMRRSIIYH--TAESFQPDIFIVDK----EPMGLRGEVEETLAYLKGQGTKLVIQLLEAEWKRNNVMTKIGQFYDHVWVYGPDVPQTVRDKMDFVGFLQ 204
6 -6.670[A] KOG2863 RNA lariat debranching enzyme  ali follow..  13  1......................................................MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVV---------------KYRGVRIGGIRSIYHVRNIEVY-KQLKQPIDIFLSDWPELLEHLKPTYWFSAHL. 227
7 -6.610[H] KOG3199 Nicotinamide mononucleotide adenylyl transferase  ali follow..  13  144.......................................PVHRLTKKLQDPEKLPLIIVACGS-LHLRMFEMALDDINEQTRFEVVYFSPVSDNYQKRGLAPAYHRVRMCELACERTSESLQSSYTRTAKVLDHFNHEINIKRGGIMTVDGEKMGVKIMLLAGGDLIESMGEILGNYGCLIVERTGSDLIIKQSSTKVRLFIRRGMSVQYLLPNSVIRYIQEYNLYINQSE...... 385
8 -6.150[H] COG1057 Nicotinic acid mononucleotide adenylyltransferase  ali follow..  12  109.......................................PKHRFRNHLVDEGKIPLVLVACGS-LHLRMFEMATDTIQEQTNMELVYFSPVNDHYKKEGLAPAYHRVRMCELACERTSSWLMVDATCTARVLDHFDEEINQKRGGITLSDGTKRPCKIMLLAGGDLIASMGEILGKFGCCIVERTGSDLVIKQSSTKVRLFIRRGMSIRYLLPNSVIQYIERYALYRDAE....... 349
9 -6.120[S] KOG3098 Uncharacterized conserved protein  ali follow..  9  4..................................................TTRRYELLSAAMLGGHLCIMVGYDSGFFDQEPTNLSGIENCAKAREMRQGTESASTIYLILYSAFMIILFNFSKFPKFYAVTNVILGQKMPKSFVLESVIHSIHEPSILNEIGAKYILICSAICFASFPLGFFFVNSYYYYFSQML----LGFGYALYYQGHGGYLTSHSTRKTIESNINIALSSGI 225
10 -5.760[O] KOG1349 Gpi-anchor transamidase  ali follow..  9  1MAVTDSLSRAATVLATVLLLSFGSV----------AASHIEDQAEQFFRSGHTNNWAVLVCTSRFHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNP-TVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPPST---SKRLLSDDRSNILIGHGGNGFLKF-LADAFEQMWQKRRYNELLFIIDASSQVGEDSLSPAIGVHLMDRYTFYVLEFLEEINPASQ...... 265
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.