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Query: [J] KOG3502 40S ribosomal protein S28, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLRLast
1 -54.800[J] KOG3502 40S ribosomal protein S28  ali  100  1MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
2 -45.000[J] COG2053 Ribosomal protein S28E/S33  ali follow..  45  6.KFSPYEDAVAGLVVQILGRTGIAGEVTQVKIKILEDKGRVLTRNVKGPVRLGDIVMLRETEREARRIT 75
3 -6.030[S] COG3831 Uncharacterized conserved protein  ali follow..  20  37.............VVRSWGRIGKAGGEMTEVFGNDNDAISRFLELVLQKRKRG................ 76
4 -5.800[R] KOG2105 Predicted metal-dependent hydrolase, contains AlaS domain  ali follow..  13  72..................GQPDDRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVVDWERRFDHMQ 123
5 -5.170[J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17  ali follow..  13  81................................RRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKS 117
6 -4.990[J] COG0186 Ribosomal protein S17  ali follow..  13  36................................KFIRRTTKLHVHDENNEAKVGDTVEIRECRPLSKTKS 72
7 -4.980[G] COG3866 Pectate lyase  ali follow..  14  236LNEHTYIQLKGCYNVTFEG-VGKDATAYGWGFLI-RDARNLELRNVGIMMFGDDAISLDTDNQNI.... 298
8 -4.540[M] COG0797 Lipoproteins  ali follow..  28  126...............AFHGRLTANGEVSYARITNMENGSSVLVRNDRGPFHEGRLIDV--SSKTADLL. 193
9 -4.540[J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3  ali follow..  24  246...........ARIWPGKRMPGHMGYVSGLEIVRINVDKQVIY--VKGSVDIGETILLKDCLQEEKRLK 307
10 -4.290[V] KOG1502 Flavonol reductase/cinnamoyl-CoA reductase  ali follow..  22  13....................TGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERLH 61

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.