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current user: public |
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Query: [J] KOG3502 40S ribosomal protein S28, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . | |||||||
# | Score | Template | Links and tools | %id | First | MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR | Last |
1 | -54.800 | [J] KOG3502 40S ribosomal protein S28 | ali | 100 | 1 | MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR | 69 |
2 | -45.000 | [J] COG2053 Ribosomal protein S28E/S33 | ali follow.. | 45 | 6 | .KFSPYEDAVAGLVVQILGRTGIAGEVTQVKIKILEDKGRVLTRNVKGPVRLGDIVMLRETEREARRIT | 75 |
3 | -6.030 | [S] COG3831 Uncharacterized conserved protein | ali follow.. | 20 | 37 | .............VVRSWGRIGKAGGEMTEVFGNDNDAISRFLELVLQKRKRG................ | 76 |
4 | -5.800 | [R] KOG2105 Predicted metal-dependent hydrolase, contains AlaS domain | ali follow.. | 13 | 72 | ..................GQPDDRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVVDWERRFDHMQ | 123 |
5 | -5.170 | [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17 | ali follow.. | 13 | 81 | ................................RRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKS | 117 |
6 | -4.990 | [J] COG0186 Ribosomal protein S17 | ali follow.. | 13 | 36 | ................................KFIRRTTKLHVHDENNEAKVGDTVEIRECRPLSKTKS | 72 |
7 | -4.980 | [G] COG3866 Pectate lyase | ali follow.. | 14 | 236 | LNEHTYIQLKGCYNVTFEG-VGKDATAYGWGFLI-RDARNLELRNVGIMMFGDDAISLDTDNQNI.... | 298 |
8 | -4.540 | [M] COG0797 Lipoproteins | ali follow.. | 28 | 126 | ...............AFHGRLTANGEVSYARITNMENGSSVLVRNDRGPFHEGRLIDV--SSKTADLL. | 193 |
9 | -4.540 | [J] KOG3141 Mitochondrial/chloroplast ribosomal protein L3 | ali follow.. | 24 | 246 | ...........ARIWPGKRMPGHMGYVSGLEIVRINVDKQVIY--VKGSVDIGETILLKDCLQEEKRLK | 307 |
10 | -4.290 | [V] KOG1502 Flavonol reductase/cinnamoyl-CoA reductase | ali follow.. | 22 | 13 | ....................TGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERLH | 61 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |