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Query: [R] KOG3515 Predicted transmembrane protein of the immunoglobulin family of cell adhesion molecules, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEITILANVSDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEAIWQLEACPSQFAMDLPAPPVHFAGARRFHDNIRFACQSLKLRPFFLRTHSYLIPLPCPIRILCPCPPTGTPDMPQPTGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSVSENIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFSVMSWNELGQSSYLPDLARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRVKKGYSSQTSSIDIRALLast
1 -151.000[R] KOG3515 Predicted transmembrane protein of the immunoglobulin family of cell adhesion molecules  ali  100  1MEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEITILANVSDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEAIWQLEACPSQFAMDLPAPPVHFAGARRFHDNIRFACQSLKLRPFFLRTHSYLIPLPCPIRILCPCPPTGTPDMPQPTGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSVSENIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFSVMSWNELGQSSYLPDLARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRVKKGYSSQTSSIDIRAL 729
2 -39.500[T] KOG4194 Membrane glycoprotein LIG-1  ali follow..  13  575.................................................................................................................................................................................................................................AAAELLLDNVAMTDNSEYQCVARNRFGSDFSTH-VKLQVYQAPKFTYTPEDMPLLV-GQTAKFLCAATGTPRP-EIKWAFEQIPFPEARRLYVTPNDDHIYIMNVTKEDQGAYTCHATNVAGQTQASANLIVFENFFHSPDLSPMLIKKRDALKIDCSCDLIS-SRQRMVWKRQQQVILFLKKAKFSDNDQILTLTQTTFSDSGEYSCELWVDDTILMRKITMVKVVNEDEFVSSEA--TLTQRVQRIRAMAS----KLVDNIKSTGNGIYLMASCSA------------FGLMILGVITSICICIAKCSCNQNHVFNV......................................................................................................................................................................................... 876
3 -29.600[W] KOG4802 Adhesion-type protein  ali follow..  1...............................................................MVPGVPGAVLTLCLWLAASSGCLAAGPGAAAARRLDE-SAGSVQRAPCASR------------------SLQITRISAFFQHFQNNGSLVWCQNHKQCSK-----LEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKP-----RKELRFTELQSG------------QLEVKWSHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPNSTVNSDGSVTVTIV-PDIPVHHYKVFWSWMVSSKSLVPTKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGEVGAPFYQDGQLQVKVYWKKTEDP-PEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFKVLAKPENLSASFIVQDVNITGHFSWKMAKANQPMTGFQVTWAEVTTESSQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI--KTFRTPELPPSSAHRSHL------------KHRHPHHYKPSPE........................................... 678
4 -27.800[T] KOG1480 Netrin transmembrane receptor unc-5  ali follow..  11  5............................................................................................................................................................................................................................................................................................................................LVKALSDVCAGTSGFLLDFSSQTSPGTDNGEALPESIPSAPGTLPHFIEEPDDAYIIKSNPIALRCKARPAM----QIFFKCNGEWVHQNEHREVFINVTRQQVEDFHGPEDYWCQCVAWSHLGTSKSRKASVRIAYLRK-NFEQDPQGREVPIEGMIVLHCRPEGVPAAEVEWLKNEEPIDSEQDENIDTRA--------DHNLIIRQARLSDSGNYTCMAANIVAKRRSL..................................................................................................................................................................................... 238
5 -27.400[TU] KOG1026 Nerve growth factor receptor TRKA and related tyrosine kinases  ali follow..  16  39...............................................................................................................................................................................................SASRIWCSDPSPGIVAFPRLEPNSVDPENITEIFIANQKRLEIINEDDVEAYV-------------GLRNLTIVDSGLKFVAHK----AFLKNSNLQHINFTRNKLT-SLSRKHFRHLDLSE-TCSCDIMWIKTLQEAKSSPDTQDLYCLNESSKNIPLANLQIPNCGLPSANLAAPNLTVEEGKSITLSCSVAGDP--VPNMYWDVGNLVSKHMNET--SHTQGSLRITNISSDDSGKISCVAENLVGE-DQDSVNLTVHFAPTIT-----FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT--NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI.......................................................................................................................................................................... 384
6 -19.400[R] COG3401 Fibronectin type 3 domain-containing protein  ali follow..  10  16..................................................................................................................................................................................................................................................SSVVLAVFIGCSSTRNHTFSALSNQENTDDKLPVVHSI----------KTINDVSSVGFEWSKDTYDIDGFVLYRLKKDSKLKRIEGLETESSYTYQLATYKGDKISKLSEPILVKTSFINPVESVFASLEYPKSVKVFWSPHPNPSVSKYIIQRQNKDGKFLNVGAVKNRLFVEFFDKDLEDGQKYRYQIIAENFMGDKSRPSVIVEG-------------KTKDLPKEIANVRVSQNLTRQIELSWDKSPE----EDVIAYRIYASNNRNDKYKFIAQTTNTSYVDKIEYKVVAVDKTHLPKEPAMGETSDRPEAPIITKG-TIQDSSALIQWENNPSPK-IATYAV-YRFEANSKTPLRFGNITQNQFVDKDMKVGVAYRYQVVSVDKDGESHPSKEVRLFLER................................................................................ 419
7 -16.400[S] KOG4806 Uncharacterized conserved protein  ali follow..  29.................................................................................................................................................................................................................................ENTESVIDLAGKVSEKRFYLHITNEASP--------FFMYVTP---------------------CGA-------AVHWQSNSLEESEKFKLIAGEDDKKRMTFFAHSLPKKVILVVRAASTSSASVRIFFTPSLFPPLPHDTRLATNIISESTYSRRDEV-----STLITWKISPQVRNAEPGRYRPQTNNTVVIGSLRRDRTYFVTVFVRDHKRGTSSAYEVQTIQTSEVVTHRRKSAPRVLSNGQLEQVELEPKKGTFVNLKFFVNSLPEGAENNTQLKRSDAFSGFRRYIKHKIQFVVTNIRSGHLRFQIVNDDETPK-TIRVWASTDPNLPDDVKIVGRSCSSASIQWIRAHDS--HVKYCVYRRREHSNFLEHLDDAQSLIETTIGGLLPASTYRLDLLATPLDRPNAQALTVWVRTNRFCGVHN.......................................................................... 543
8 -16.300[R] KOG0619 FOG: Leucine rich repeat  ali follow..  10  83LEEIDLSDNIIANVEPGAFNNLFLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSLILHLKHLNINNMPVYAFKRLFHLKHLEIDYWPLLDMMPANSLYGLNLTSLSVTNTNLSTVPFLAFKHLVYLTHLNLSYNP-------------STIEAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQN-LLETLEENVFSSPRALEVLSINNNPLACDC---------RLLWILQR------------QPTLQFGGQQPMCAGPDTIRERSFKDFHSTALSFYFTCKKPKIREKKLQHLLVDEGQTVQLECSADGDP--QPVISWVTPRRRFITSNGRATVLGDGTLEIRFAQDQDSGMYVCIASNAAGN-DTFTASLTVKGFASDRFLYANRTPM---YMTDSNDTISNGTNANTFSLDLKTILVSTAMGC----------FTFLGVVLFC--------FLLLFVWSRGKGKHKNSIDLEYVPRKNNGAVVEGEVAGPRRFNMK......................................................................................................................................................... 604
9 -15.900[T] KOG0689 Guanine nucleotide exchange factor for Rho and Rac GTPases  ali follow..  13  262IEEKGVPEGKDKIV------GNIHQIYDWHKD-AELEKCIQEQDRLAQLFIK----HERKLHIYVWYCQNKPRSEYIVAE----------------EEVKQEINQRLTLSDFL---KPIQRIT-LKDFLRYSEKAGLECSDIEKAVELMCLVPKRCNDMMNLGRLQGFEGTLTAQGKLLQQDTFYVIELDAEQIVIFSELLRKGSLTPGYMFKR---------SIKMNYLVLEENVDNDSERVVLQAANADIQQAWVQDINQVLETQRDFLNALQSPIEYQRKERSTAVMRSQPARLPQASPRPYSSVPAGSEKPPKGSSYNPPLPPLKISTSNGSPYYALKENEICVSQGEVVQVLAVPGSILAPLTKATAAESSDGSIKKSCSWHTLRMRKRAEVENTGKNEATGPRKPKDILGSVKETNSSEESECDDLDPNTSM----GILNPNFIQEVAPEFLV--PLVDVTCLLGDTVILQCKVCGRPKPTITWKGPDQNILDTDNSSATYTVSSCDSGEI--TLKICNLMPQDSGIYTCIATNDHGTTSTSATVKVQGVPAAPNRPIAQERSCTSVILRWLPPTGNCTISGYTVEYREEGSQIWQQSVASTLDTYLVIEDLSPGCPYQFRVSASNPWGISLPSEPSEFVRLPEYDAAADGATIS.................................................................... 978
10 -14.400[R] COG3291 FOG: PKD repeat  ali follow..  10  313....................................................FSQTAVDANGDGIADSAYAISEKNYDYLLTAKYNSASPASDFTANVTSGTAPLVVLFT-DTGSGVTPTSWLWFGDGITSKHARTTHTFTNPGTYDVSLTVTNAAGSSTVNKSNYISVTPPQAPVADFFSPEVNDLRDFGESIPINETVSTGSPMSWLWDFGDGATSTARNPEHA-----------SARGGYTVTVTNSFGSNTTSKYGYVLVGVIDA-AYFSSDVRSGNAPLTVTFV-DAESPNYPIWREWFGDGVVQTYMVDDNDSATPYAMHV-----KKPGKYTVYMDNRGGNSIITKYHYITVATVVNFSANVSSGPAPLVVLFTDTSTGPAPSS--WLWD-DGINSKHAMNATHT-------------TEPGNYTVTVENSAGNNTVTKTDYIVVTDPVATSSSGGSSHKSSGGSSGGGGGGSPEPAKNVEVKELSQVFITNGNEVKFDFTK-------------------NATCVVYVGAKRTLGKTTTIVE-QLKNSSSLVSELPEGEVYKSFNIWVGSSKNIENPVIGF-----------------------------KVEKAWIQDKGIDQASISLNRYKDEKWEQFPASLSGEDDKFLYFTAESFAITGESKSTLGGSETGANLGSETRAVDETDEGNEGPEAEQEADPKESASLPGFEMIYGMAGL 948
11 -12.600[T] KOG3611 Semaphorins  ali follow..  83.GSSSVWVGGRGKVYLFDFPEGKNASVRTVNIGSTKGSCLDKRDCEN----YITLLERRSEGLLACGTNAVNGTVVPLGEMRGYAPFSPD-----ENSLVLFEGDEVYSTIRKQEYNGKIPRFRRIRGESELYTSDTVMQNPQFIKATIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGLKAMLVCSDAATDPSGQWRDTRVYGVFSNPWNYSAVCVYSLGDIDKVFRTSSKCLPDQQPIPTETFQVADVAQRVEPMGPLKTPLFHSKYHYQKVAVHRMQASHGETFHVLYLTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRA----AAIQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYGGGCH-GCLMSRDP----YCGW------------------------------DQGRCISIYSSERSVLQSINPAEPHKECPNPPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEP----------GHQSPNCILFIENLTAQQYGHYFCEAEGSYFREAQHWQLLPEDGIMAEHLLGHACALAAS............................................................................................................................................................. 650
12 -11.600[R] COG2373 Large extracellular alpha-helical protein  ali follow..  393.PRDLYRPGETVILN-KALPNQPIKLDVIKPDGQVLRSVVSQP-ENGLYHFTWPLDSNAATGMWHIRANTG-DNQYRMWDFHVEDFMPERMLNLTGEKTPLTPKDEVKFSVVGY-GAPAN-------GNTLQGQLFLRPLRLSRTLDEVQLTLDDKGRGE-----STESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADALPGIRPQFA-SKSVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLI----------------------------------DYYWNWDEGWQSQFDQKDLIENEQTLDLKASFPVEWGAYRLEVKAPNEAVSSVRFWAGVRPDRVTLKLDKASYRPGDTIKLHIAA---PTAGKGYAMVESSEGPLWWQEIDVRAQGLDLTIPDKTWNRHDLYLSTLKRAVGGDENRRLDLALETPAKMREKPKQVNVLVSAVDSGVLNITDYVTPDPQAFFGQKRYGADIYDIYGQVIEGQGRLTLNEQGEGSVTLPIGDFNGELRVMAQDDFGSNESKVIVAVIAELNMPRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLF---------IPVRALPGYGDGEIQATIS..................................................................................... 1103
13 -10.200[S] COG1470 Predicted membrane protein  ali follow..  188.SEVTTEVNRSIMLPLTIFNGTETVNVTWDVKFYYQGIEIKKLKLREKESITLQKVLPSSAGSHVVKFS--INGDIYSFYVNVVQPKMEALITAPILVQEAEAGSKVTFSVLLSAEDSVISMDWLVDGVRAQEIYLRRGETKVVNLILEIPRNASLGYY---------------------------------ESKISFTVRKSNGEVIKNETITLGVNIYKTYKGQKATLKLILVDDTGSPVPKALVKVGNESYATDSTGTLEVEMNP---------------GKYVITIEKEGYETKKEEVELGDGEKKELKLLLVREPYYFNVEAQSVMEGLSRPFTIVIENL-GKSDDEYKLEIRGIPE-NIEVTKVKVKSGETKTV------------------------------------YLKVYPSLNAMPGTYTITVISSSGIKKEIPVKIKLIGSYNMNVNLLNYRLTITAGEEKTAMMDIFNFGNAPLTW-----DVKVDPSQIPSLSPKGRERV----TITVKVPEGTPAGDYQITVKADQAEWQDTLRVVVRQRSTSTYIGVLILIISFALVL.......................................................................................................................................................... 719
14 -10.100[S] KOG3594 FOG: Cadherin repeats  ali follow..  9...................GPAGQRRML-------FLFLLSLLDQVLSEPIRYAIPEELDRGSLV-LAKDLGFGVGDLPTRNLRVIAEKKFFTVSPENGNLLVSDRIDRE----------EICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITELE-ISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL-------IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTVDGGEPSRSCTTQIRVIVPPVFTQDMYRVNVAENLPAGSSVLKVMAIDMDEEIIYAFINIGKEVRQLFKLDSKTGELTTIGLDFEERDSYTIGVEKDGGHHTAYCKVQIDIAPEITLASESQHIQEGTAVALIKTHDLDSGFNGEILCQLKGNF------VQDTKNTYRLVTDGLDREQIPEYNITATDKGNPPLSSSKTITLHIVPVFHQASYTVHVAENNPPGASIAHVRASDPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLQARDQGSPTLSANDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEPGLFSLGLRTGEVRTAR-REAARQRLLVTVRDG-GQQPLSATVMLHLI--FADSLQEIQPDLSDRPTPSDPQAELQFHLVVA-------------LISVLFLLAVILAISLRLRCSSRPAT........ 723
15 -9.920[M] COG1361 S-layer domain  ali follow..  16LVQPSLAQGPELLYEGYMNKGDPLMILKWNEDMEPIGPNLTLIYVPDPQKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFLRWLSTASQMEIWNAIVKTIDEHPELGI-----RLEDISKPYYVPNARPVGVNETIKIEYRGKTVYITVLSAYPNGV-KVSISGPIQWRASMVQGLLLSKIDVKGTIKPGQYFTVEVHLKNIGSRKVR-ESSVKFIDLIEPGEDKVIKFLYKVNENAKPGDYPLYLTLEQRTLYDTAVVTVARDYEANFIIVQNVPRIVHPGEDFTINVTFKGEDPAKDVR-----ILEDITGRVFTPVSPSNFYRKFVDPGMEFNFKLHVSESAKTGTYTFKIRLKY------YSGNSNQEKTQDFTISTTVIRRREAFIEID-------------------NVTLTPEKIEPGTTFNITLRLRNV-GEGYAKGLEVRIVPTKALVRREIKKNLPIPGGKELAKNLQTALNQVIGQIAQEEVSAFLPIGEDNVKYNGVIMPNQTIEIHFTLKANERLENNIYPIKIESSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRIL-----PGTSNVEISFKIENVGDGKADYIIIMTSDQIINVGSLGKGDSASFKVDVDENAKSGRYLIPLTIEYKDPTGKFRQ--------IEVNIPVIIAEKPKLVITDVRFGEKPVQ--GKDVNIYITVKNVGGEQAESVVIELVKRTDYIGTL 812
16 -9.500[GC] KOG1192 UDP-glucuronosyl and UDP-glucosyl transferase  ali follow..  13  2............................WLFGSVVQ-------------SLLYTYLAIAKNVELSCLEKV---ERDIGEEQRIKV-------------VHAVRGADVILPC-SPEDGVEIDSTYKPSAGSVGRTVNYVVDFFKQKFLRSSFSMPDKNRWKFD---QYAMMGRMFVPLSSMHFDASESISDRIRRFTS-------------------KDEAEFKIGDRYELVLKDVDANSTGHYRCI--NRHGRNVISNMYFLEVSNTKKIIETLPAEVTLKNSKFVKENLKVETKAGP----WSK---------------------------------YC--SSDRGEQTRTIKCYVEPSVRISALNPELRYLG----KIPCSSTLLPLDLRTKLKRIGNHQIFLETRPCFEECTGSEEISRISSQDLGDIRTLDYLPGGEFVFGNIL------PRLLPPVVRRVRLVLENDPQVLSCQKLIDLNAGVHWYSMKFGPVQHTNIHELYKDRAY--FDEETNLVFRKFALEDDDEYFCYSSNNILLGTFHMRVV................................................................................................................................................................................. 449

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.