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Query: [P] KOG3826 Na+/H+ antiporter, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHCVARLHNTLHNFFNNREINSITTTILIFISLYISIITLLGENFLNPLADHVNPVNATNEDVTVRSIFVIFILLVAGIFAAKISKALRLPPLFGCLALGIIIKNITVFDQFFVFPPFVETMIRKVALVMIIVRWGLATDIHFLYENALMPVTIGLVTAIGEIIAVTIASYFILNISFVMSIFCALILVTVSPAVTVPAMINFKEKQLGSLKRIPENILAICCVDNLFCVILFMVLSSIIFTDAPIATTILLNAGSIVFGCIGGIVLGWILWRFPRSDAPHTQFARITLLGTICIAVVIGTYLIKYSCSGFLAALITSAMSAMQWKADNKEKLECVESTYKYIWDSFALPLLFICLGMKFDCSTLTWEIVFLCIAVIAIGLLVRTILVMLVTLSSHINFKEQIVVALSLLPRATFQADLAPTLLLMATPFPDMAKDAALILKAAILSVLITAPIFDILLNLVGSKCLSQYNPQDAPAIEKNFDKTYMNGDHVDETIYAARPKTYSEYRSEAVIERYLast
1 -112.000[P] KOG3826 Na+/H+ antiporter  ali  100  1MHCVARLHNTLHNFFNNREINSITTTILIFISLYISIITLLGENFLNPLADHVNPVNATNEDVTVRSIFVIFILLVAGIFAAKISKALRLPPLFGCLALGIIIKNITVFDQFFVFPPFVETMIRKVALVMIIVRWGLATDIHFLYENALMPVTIGLVTAIGEIIAVTIASYFILNISFVMSIFCALILVTVSPAVTVPAMINFKEKQLGSLKRIPENILAICCVDNLFCVILFMVLSSIIFTDAPIATTILLNAGSIVFGCIGGIVLGWILWRFPRSDAPHTQFARITLLGTICIAVVIGTYLIKYSCSGFLAALITSAMSAMQWKADNKEKLECVESTYKYIWDSFALPLLFICLGMKFDCSTLTWEIVFLCIAVIAIGLLVRTILVMLVTLSSHINFKEQIVVALSLLPRATFQADLAPTLLLMATPFPDMAKDAALILKAAILSVLITAPIFDILLNLVGSKCLSQYNPQDAPAIEKNFDKTYMNGDHVDETIYAARPKTYSEYRSEAVIERY 516
2 -46.000[P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain  ali follow..  14  1....................................................................................................MLAGVDGVGGIPFD-NYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKG-----LNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHESNISFIVDILQQFGLGIVIGLGGGYLLLQMINRIA---LPAGLYPLLALSGGILIFSLTTALEGSGILAVYLCGFLLGNR-----PIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLFRGFNLRERVFISWVGL-RGAVPIILAVFPMMAGLEN------ARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPK. 397
3 -44.800[P] COG0475 Kef-type K+ transport systems, membrane components  ali follow..  17  4.................................................................HILINVIILLGTAVFIVAILKRFRLSPVLGYLIAGAAIGDHGLKIV----TYDQTKLLGELGVVFLLFAIGLELSFERLKAMRRYVFGLGSLQVLTTAIVIAGAM-VLIDGNSSAAIITGGGLALSSTALVMQVIDENRS----QSTQIGRISLAILLLQDLAVVPLLVIVPLLASNNKASAVALGIAFLKAVTALLTIFIVGRVLLRPVFSSSESNNTSELPISMTLLIVLSAAWATETFGLSLALGAFVAGVLVA-------ETEFRLQAEESIYPFKSLFLGLFFMTVGMNIDALEMYEKISHILTLSIAL-ICIKTLIITAFCILFGFNKGVAFYSGLLLSQGGEFGFILFSLGKDSGVLEES-------TADILLLVVTFTMALTPLLAAL....................................................... 378
4 -44.000[P] COG4651 Kef-type K+ transport system, predicted NAD-binding component  ali follow..  15  6.................................................................PLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAGPFTPGFV---ADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALSA-VLGWSLMTGIVFGLCLSTASTVVLLRALEERQL----IDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAGAVELFDVSFALGAFFAGMVLN-------ESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAII-LFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNLLPQA-------GQNLVLAGAILSIMLNPVLFALLEK.................................................... 389
5 -42.600[P] KOG4505 Na+/H+ antiporter  ali follow..  12  15..................................................................YAIIGGFTSLFMLCSLIIKEKLFLGEATMATATGLIFGPYVAKLFVPTSTDYITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIRLSFLESLAIAACITATDPVLASSIVGK-GKFARRVPGHLRNMLLAESGCNDGMAIPFLYLAIYLIIEKPARHAGCIIILYECTFGCVLGAIIGVIARKMIKFSERRLMDRESFLVFYFVLALFCGGIGTIIGVDDLLVSFCAGAAFSW----DSWFSKKTEESHVSNVIDLLLNLSFFVYVGAIMPWPQFHMPHMDLLVVLAICILIARRIPAVLLFKPDIINWREALFAGHF--PIGVGALYTCLVARAIENPEIPNWYCIQVMWPVVCFLVLSSIIVHGSSIAFFMLGKRINTLALSFTRTRDSHFAFN.............................. 458
6 -38.600[P] COG0025 NhaP-type Na+/H+ and K+/H+ antiporters  ali follow..  12  2.................................................................EIFFTILILILVVSLSGVVTRMLQVPLPLMQIVCGALLAWPNFGLHVNFDP----ELFLVLFIPPLLFADGWKTPTREFIHHGREILGLALALVLVTIVGIGYLIYWMVGIPLVAAFALAAVLSPTDAVALSGIVGKG-----RIPKSIMGVLEGEALMNDASGLVALKFAIAVAMGTMTVSGATLEFLKVAIGGLLAGVAITWLYSKSLRIMSRWSGDDPATIVLLLLLPFASYLVAEHLGVSGILAAVAAGMTISQSGIIRNPLAMRLRADSVWSMLEFVFNGMVFILLGLQLDPTIQTWNLFADVAIIYGALLLLRFGWLWSMKKISKYTTRELWVASFAGV-RGAITLAGV-LSIPLFLSDGSAFPSRYQLVFIATGVILLSVIIGVIALPPLLRGVVVADKSASREEIRLARAAMAEVA........................... 446
7 -38.200[P] KOG1650 Predicted K+/H+-antiporter  ali follow..  10  53..................................................................MLLQMSVIIITSRLLYRLLKPLKQGMISAQVLAGIILGPSLFGQFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKAILIGTASYALPFSLGNLTVLFLKNT--HCISTVISLNAMTSFPVTTTVLAELN-----LNSDLGRLATNCSIVCEAFSWIVALVFRMFLRDGTLASVWSFVWVTALILVIFF-VCRPAIIWLTERRSISIDKAGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSL------DGPPLGTGLTTKLEMFATSLMLPCFISISGLQTNFFIIGESHVKIIEAVILITYGCKFLGTAAASAYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTE-------CFNLLIITLLLVTGISRFLVVCL...................................................... 444
8 -35.000[P] KOG1965 Sodium/hydrogen exchanger protein  ali follow..  11  25..................................................................SMNLFVALLCACIVLGHLLEETRMNESITALIIGSCTGIVILLISGGKSSRILVDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFVIISFGAKHLFDLTIADYLAIGAIFSATDSVCTLQVLNQDETP------LLYSLVFGEGVVNDATSVVLFNAIQRFDLTNINSAIAAGNFFYLFILSTALGVAAGLLSAFVIKKLYIGRHSTDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKVTTKHTFAAMSFLAEIFIFLYVGMDAVVRNSPGQSIGVSSILLGLILLGRAAFVFPLSFLSNLLKKQVTIWWAGLM-RGAVSMALAYNQFTT--SGHTKVLGNAIMITSTITVVLFSTVVFGLLTKPLVKHLQPSSKQSSTTALQITLRSSFHD............................ 467
9 -29.800[P] KOG1966 Sodium/hydrogen exchanger protein  ali follow..  11  24..................................................................VITTWLLVASLAKILFNLMKPLSLPDSSLLIIVGLGLGYFLNQTTLSGVHLD--HAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAIGGSLLIMMPFTTFEILVFSALISAVDPVAVIAIFEEI-----HVNEFLFINVFGEALFNDGVTVVLYQMFKSFALIGSESPWDYATGGLSFFVVALGGAAIGIIFAIATSLATKYTQGIKILPVFIFLLPYMAYLTAEMVSLSSIIAIAVCGMLMKQYIKGNITEAATNSVKYFTKMLAQCSETVIFMFLGLST-LTSEHHVDFIFIGATLVFCLIYRAIGIIVQCFILKFEVVDQFILSYGGL-RGAIAYGLV-------VSIPASIQAKPMFITTTICVIYFTVFLQGITIRPLVNCLNVKKKEHREATMVESVYNKYLD............................ 448
10 -14.700[R] COG3180 Putative ammonia monooxygenase  ali follow..  10  1.............................................MKPEQPSTPMLPKNGGLGRLSAVWQWCLLALLSAVFAGVLEMIGIPALMGPMIAGALVGMNGG-------TIRLPRQLFFCVQVVLAMMIAASMSPDLLVTFSGLLFLAIILSVIGVSTLCGWTITRMGILPGTTAIW------GSSAGAASTM-----------------LLMADAYGADARLVAFMQYLRVV--------------FVASTATIVSHLWVSGVEAETATHWFAPIAGLPFFMTLAVGIASGILGKILRVPAGAFLVPFAIGSAL---------NITGTLTIELPQWLLALSFAMLGWNIGLGFTRAILAHRALMPTIVSIVVLISFSGLLALLLIKVAGIDPLTAY---LATSPGGLDSIAVIAASSNVDL---------PFVMALQTARLLIITLIGPALARFVADR................................................... 361
11 -14.200[S] COG2855 Predicted membrane protein  ali follow..  20...................................................................LALSAVITGVALWGGSIVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVKQYLLRLGIILY----GFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVA--IFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAE----NAAVISKMLRVMMLAPFLILLAARVKQLSGANSGTIPWFAILFIVVAIFNS----LLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSV....................................................................................................................... 347
12 -14.200[R] KOG4821 Predicted Na+-dependent cotransporter  ali follow..  14.................................................................................HSVTEFLKSQWFFICLAILIVIARFAPNFARDGGLIKGQYSIGYGCVAWIFLQSGLGMKSRSLMANMLN--RAHATILVLSFLITSSIVYGFCCAKIDDWVLIGLILTATCPTTVASNVI------TTNAGGNSLLCVCEVFIGNLLGAFITPALVQMFTNRNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTAYYLGF-HIKIGSYMLLLIMFSSFSTAFYQDAFTSVSHVCII---------------------FLCFFNLGIYIFFTGLSYLCARPWFILKLFPHEPIEGKSTRLYRYSYNIFRPFYYSKEDAICIMFCGPAK---TAALG-VSLITSQYGDKKEHLGKLLVPLVLYQ-VEQVMTANFFVSLFKRWIQKDAQADGSESSCANENEEVDLEKIISI...................... 415
13 -11.700[S] COG5505 Predicted integral membrane protein  ali follow..  10  7...............................................................SDDVWVLWGFIAVWAAVSIGLEQRFKVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLF----QINVRQIFKESRRLL-FIFLISSVGTVLGSILAFFLLK---IGGMISASYIGGGVNFAAMAAKFETPG----------EYVSATVVADNFMMALLFFILISIPKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFFERLNGSQELGTFLI---------------------------------LFFVVIGIPADLRLIVTNAPLI-LLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIA---------------RELVAPIMLVGTLGYLIGNYV.......................................................... 384
14 -11.700[R] COG0385 Predicted Na+-dependent transporter  ali follow..  10  12............................................................................................LIATILFASVLPVRG-------EFAVWFALATKIAVGLLFFLHGARLSREAVIAGITHLHVTVLASTFVLFPILGLAAGWAIPGLSQSPFYTGILYLCVLPSTVQSSIA------TSMARGNVSAAVVSASASNIFGMFLTPLLVGLLFAIKGGGGISMDALESILLQLLAPFVLGQVLQPFIGNFVRRKARVLAVVDRGSILMVVYLAFSEAI---------------------------------------------------VEGLWRTVSWDDLGMMVGVNILLLAVVLLATWYGSKWLGFSRPDRITIMFCGSKK---SLASGALMANAIFAGANVGNIVLPLMLFHQIQLMACAIIAR............................................................ 311
15 -11.000[P] KOG2718 Na+-bile acid cotransporter  ali follow..  11  105................................................................................................VSLGCLLG------MRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKEL-FAGFLLQYSVMPLSAFFV--LNLPPHYAAGLILVGCCPGGTASNIVTYIARG--------ALSVLMTAASTVSAVIMTPLLTAKL-AKQYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSP----VMPPIAVGTV----------------------------------------------------AILCGYAIGQNASAILMSGKQVVLASCLLHISGFLFG-YLFSRILGIDVASSRTISIVGMQNSVLGVVLATQHFGNPL-----------TAVPCAVSSVCHSILGSVLAGIWRRSAPKQLED............................................ 401
16 -10.700[P] COG0798 Arsenite efflux pump ACR3 and related permeases  ali follow..  13  22............................................................................................VFLCIFVGIALGRLELAVKLDAISVYQVSIPIAVCLFFMMYPIMVKIDFTQAMNALRTPKPVILVNWLIKPFTMVAFSQFFLGVAIANSYIAGTILLGIAPCTAMVLM-------GYLSYGNQGHTLVMVAVNSLAMLFLYAPLGRWLLAANDLTVPWQTIVLSVLIYVGLPLIAGIYSRYWIFKYKGKEWFESRFLKYLSPIAITA------------------------------------------------LLLTLILLFAFKGELIVKNPLHILLIAVPLFIQTNFIFLISYVAALKLNLAYEDAAPAALIGASNHEVAIATAVMLF----------GLNSGAALATVVGVLIEVPVMLMLVELC...................................................... 350
17 -10.600[R] COG1380 Putative effector of murein hydrolase LrgA  ali follow..  14  11..................................................................YIRAFVLIYACLYAGIFLASLLPITSIIGMLILFVLLALQILPAKWVNPGCYVL--IRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAISTLVVFVVVSWSSHLIHG..................................................................................................................................................................................................................................................................................................................................................... 120
18 -10.600[E] COG0786 Na+/glutamate symporter  ali follow..  12  13...................................................................FLIAISVLFLGHFINAILTKFNIPE----IVGGLIVACVITALHFHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIGVGVSLAAGLGLDPLLGLIAGSITLS----------------GHGTGAAWANTFAENYGLANTLEI----------------------AMASATFGLIIGGIIGSPVAQKLVDKHGIESEYGIEILFILLICVTGAKYLEWLMIPDFVYALFIGVFITNLLEVTK---LRKVDAETVDILGTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISGHCGFGLGATPTAVMNMGSVVKRFGPSPQAFMVVPIVGAFFIDIVNLIILQGYISFLG..................................................... 408
19 -10.500[R] COG2985 Predicted permease  ali follow..  10  2.............................................................SDIALTVSVLALVAVVGLWIGNIVRGVGF-GIGGVLFGGIIVGHFV--QAGVTLSGDMLHFIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIMGGLVTAILHKIFAIPLPVVLGIFSGAVTNTPAL-ICSRLKRDDTLMVPSPGTIIQA----GDLLHLV-LRVERVVVTNEKVLGKRIRDLHFKERYDVVISRLVGNAQQKLQQVQMLPVFIGIGLGVLLGSIPLFVPGFPVALKLGLAGGPLIMALILG--RIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLTQGEGLSWIGYGIFITAIPLITVGLLARIFAKMNYLTLCGMLAGSMTDPPALAFANNLHATSGAAALSYATVYPLVMFLRIITPQLLAVIFWGMG..................................................... 553
20 -10.200[P] COG3004 Na+/H+ antiporter  ali follow..  11  15.......................................................................GIILIIAAILAMIMANSGATS-FLETPVQLRVGSLEI-------NKNMLLWINDALMAVFFLLVGLEVKRESLASLRQAAFPVI---AAIGGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSR---VPLALKIFLMALAIIDDLGAIIIIALFYT---------------------DLSMASLGVAAVAIAVLAVLNLCGARRTGVYILVGVVLWTAVLKSGVHAT--LAGVIVGFFIPLK-EKHGRSPAKRLEHVLHPWVAYLILPLFFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLAGTTYQQIMVVGILCGIGFTMSIFIASLAFG-----SVDPELINWAKLGILVGSISSAVIGYSWLRVRLRP................................................... 386

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.