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Query: [R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSRRQLIPIATKSVSPFLRSSITCRRISMGRKELSEKDSNILDSVIRVDQAGELGANQIYKGQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTFLRPFWDIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETAHLENKAPEFKEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAIQMGCKAAIWMCKRFLast
1 -99.800[H] COG2941 Ubiquinone biosynthesis protein COQ7  ali follow..  100  1MLSRRQLIPIATKSVSPFLRSSITCRRISMGRKELSEKDSNILDSVIRVDQAGELGANQIYKGQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTFLRPFWDIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETAHLENKAPEFKEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAIQMGCKAAIWMCKRF 216
2 -99.800[R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5  ali  100  1MLSRRQLIPIATKSVSPFLRSSITCRRISMGRKELSEKDSNILDSVIRVDQAGELGANQIYKGQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTFLRPFWDIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETAHLENKAPEFKEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAIQMGCKAAIWMCKRF 216
3 -19.900[R] COG2406 Protein distantly related to bacterial ferritins  ali follow..  12  3..........................RVAREMVEKAGVDVDKLLELLIKNAAAELTTYYYYTILRANLIGLEETIKEIAEVARIEDRNHFEALVPRIYELGGKLPD-----DLSACPPARLPDKPTVQEILRVLVAAERCAVKGYTEICNMTAGKD------HRTYELSLAILNEEIEHESWFSEFLGEGPS........................ 164
4 -17.900[S] COG1633 Uncharacterized conserved protein  ali follow..  14  13.....................................RNLKGIEEAIALAIDREKEAREFY--LQQAGLMENPKFKELYEELAAEEMKHLGYLENYRDKKELPEISTE-----------VGEITLGDAGILLAAMRHERKSEDFYSEMAKRV--------EDETQKKFFEMLSRYERGHYE................................... 152
5 -16.700[P] COG2193 Bacterioferritin (cytochrome b1)  ali follow..  15  2.....................................KGDTKVIERLNEALFLELGAVNQYWLHYRLLNDWGTKLAKKERAESIEEMQHADKIIDRIIFLEGHPNL----------TLAPLRIGQNVKEVLEADLAGEYDARTSYKKSRDIC-----SEAGDYVSMKLFEALLIDEEGHID................................... 132
6 -14.500[P] COG3546 Mn-containing catalase  ali follow..  13  15....................................SEPNPGLANLLLEQFGGELAAACRYFTQGLSDD--DAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKG---------WTAAYIDTIGEVTADLRSNIAAEARAKIIYERLINLT--------DDPGVKDTLSFLMTREVAHQLS.................................. 187
7 -14.300[S] COG3461 Uncharacterized conserved protein  ali follow..  17  13.....................................TGKDRDFVRALNSLKEEIEAVAWYHQRVVTTK--DETVRKILEHNRDEEMEHAAMLLEWLRRNM................................................................................................................... 74
8 -13.600[S] COG4902 Uncharacterized protein conserved in archaea  ali follow..  12  24............AAYRGTPGPSPVALAQVSYYAPLSDEEANSLLYMIEE----EKLARDVYL------KLYNETGLIIFDRIAQSEQRHMDAVLMLIEKYNLTAPD-------------VEMGSQSVVDALKVGALIEEIDIKDLEEWLSKV--------DNEDIKVVFENLMDGSKNHLR................................... 181
9 -13.500[S] COG1814 Uncharacterized membrane protein  ali follow..  14  1..................................METTSNSKLVEVARKAALDEYKEYVTYS--VLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWR------RLYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAE----------PLLSGPDREALRRIIKDEEEHER................................... 130
10 -13.400[C] COG1592 Rubrerythrin  ali follow..  14  3..........................................TLENLVKAFIGESMARNRYTFYAKVAKDEGVFIQRVFLETAENEKEHAENLLKFIQQLRGDNAAIKVEAEAPLVWGTTVENL------KAAIEGEHYENSEMYPQFADEA-----EKEGFKDIADRLRAIGKAEEHHER................................... 131
11 -12.900[S] COG2833 Uncharacterized protein conserved in bacteria  ali follow..  12  75...................................SLNTEHGRIALMHALAHIELNAIDLALDIVARFAVKPISFFDGWMKVADDEARHFTLLRNRLKSLGADYGDMPAHDGLWQSAHQTRNDLEARLAVVPLI--LEARGLDVTPSLLEKM-----IETGDHETAAILNIIYNDEKTHVAVGARNRIDPAARFRELVRANFRGELKPPFNELAR. 257
12 -11.300[S] COG3396 Uncharacterized conserved protein  ali follow..  7  19..............................PQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKA--ILLAKVQDEAGHGLYLYSAAETLGCAREDIY-------------RMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFE-----------ACMALAQGSEAQKQMLQDAI 184
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.