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Query: [S] KOG4102 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDSNCDLSMVNGQTEPKDPKWASSSTQITSRASETFSGVGSAISTETSLQPVAAPTMYCLRLAQQRPITERHVHFHAGVIDNEHMNRRKSKCCCIYRKPHPFGESSSSTDDECEHCFGHPEVRTRNRLEKQRIQEQQNGCSCCHHHHRLHSNRNNRPPTEEIAQHKDDLAKEEPKSVVNNESSLKLLNEENVKSSKPRFRRQRKAEENPLRKCSSVLVTQRAENRKKNLast
1 -102.000[S] KOG4102 Uncharacterized conserved protein  ali  100  1MDSNCDLSMVNGQTEPKDPKWASSSTQITSRASETFSGVGSAISTETSLQPVAAPTMYCLRLAQQRPITERHVHFHAGVIDNEHMNRRKSKCCCIYRKPHPFGESSSSTDDECEHCFGHPEVRTRNRLEKQRIQEQQNGCSCCHHHHRLHSNRNNRPPTEEIAQHKDDLAKEEPKSVVNNESSLKLLNEENVKSSKPRFRRQRKAEENPLRKCSSVLVTQRAENRKKN 228
2 -10.700[S] KOG4610 Uncharacterized conserved protein  ali follow..  11  313............VVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRK-----RKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS 523
3 -9.040[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  5  406......................................................................................................KEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD 531
4 -9.000[S] COG5291 Predicted membrane protein  ali follow..  7  221.......................................................................................................ARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNES 345
5 -8.990[T] COG5409 EXS domain-containing protein  ali follow..  11  345......................................................................RRCMWNILRVEHEEIYNRENLRAARELKPLDFVKPHSDVFVSHQISSDKNYTDDEDSMDDQTDVDEAQFS........................................................................................ 414
6 -8.120[S] KOG4418 Predicted membrane protein  ali follow..  9  271LTVSVNIVIISNGEPSRRSMTLGGHSGRAHPSLAKLRDNILNGTIDFAEVPIADMNPEDIRAELKRVYTQLRMYKLKNLQDNPHISKKRG------------GKKWSDKNTKATRRISIPSCSPQTKRIEEDEKSDLTVESSPHNIYLSNFKGVNVNSIEQHNSVR.............................................................. 432
7 -6.910[K] COG5164 Transcription elongation factor  ali follow..  7  1MSDNSDTNVSMQDHDQQFADPVVVPQSTDTKDENTSDKDTVDSGNVTTTESTERAES------------------TSNIPPLDGEEKEAKS------EPQQ-PEDNAETAATEQVSSSNGPATDDAQATLNTDSSEANEIVKKEEGSDERKRPREEDTKNSDGDTKDEGDNKDEDDDEDDDDDDDDEDDDDEAPTKRRRQERNRFEAEVSDDEDEDEDEEDSELVREG 206
8 -6.880[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  10  514...............................................................................IEAKSYNRRERS-----HRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKP 663
9 -6.790[P] KOG3574 Acetyl-CoA transporter  ali follow..  12  1MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGDFLKAPQSFRAEKLLWAP-LVDAKNFGRRKS.......................................................................................................................................... 142
10 -6.720[A] KOG0796 Spliceosome subunit  ali follow..  9  215............................................................ALKKLTARQEPVVDSTKYTAADVRITDQKLRLCC----------SVYDSDRRLADHFGGKLHLGYMLIRDKLAELQEEKNKVHKERVEERRSKERSRERESSKDRDGGDNRDRGRDVDRRSRDRDRHHDHREHDRNYNQSRGYDSRSRRSSRSRSRERPRDHDRRRRH 378
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;