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Query: [S] KOG4200 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDTDSSSSSSTSSLESCEKRSTVGENDELEVSLVDFETIEIDVDVTDSANSSIDSISEKGEDFEVIDSCTDTEKNMGENDSGRVDPFTVTTLNDERGEIYTGPEYTSTDWSLTSLVIRSIEFQVSLMITFIRFPPWLISKCLSFVFDPYRTMRRGRRYLVSWIVGLCDSGLKDDKPVLELVRRVTWGLFCAVYVGIMLFALLVSAFMISGFVITYLAHEPLVIKESLNFDYTKSSPEAYVPISSCAGVAFGLSGKESIETGKVKGLKDRTEITVSMTLPESEYNRNLGMFQVRVDFLSASGHVLASSRRPCMVKFSSEPIRLVQTLLKIAPLVTGYVSEIQTLNLKLKGLVEKDIIPTACLKIMIEQRAEFRPGAGIPEIYDASLFLESKLPFLKRIIWNWRKTLFVWISMSLFIMELLFALVFFRPLIIPRTGQRTQQRDGTHSINNNLYLDGQAGSRLast
1 -122.000[S] KOG4200 Uncharacterized conserved protein  ali  100  1MDTDSSSSSSTSSLESCEKRSTVGENDELEVSLVDFETIEIDVDVTDSANSSIDSISEKGEDFEVIDSCTDTEKNMGENDSGRVDPFTVTTLNDERGEIYTGPEYTSTDWSLTSLVIRSIEFQVSLMITFIRFPPWLISKCLSFVFDPYRTMRRGRRYLVSWIVGLCDSGLKDDKPVLELVRRVTWGLFCAVYVGIMLFALLVSAFMISGFVITYLAHEPLVIKESLNFDYTKSSPEAYVPISSCAGVAFGLSGKESIETGKVKGLKDRTEITVSMTLPESEYNRNLGMFQVRVDFLSASGHVLASSRRPCMVKFSSEPIRLVQTLLKIAPLVTGYVSEIQTLNLKLKGLVEKDIIPTACLKIMIEQRAEFRPGAGIPEIYDASLFLESKLPFLKRIIWNWRKTLFVWISMSLFIMELLFALVFFRPLIIPRTGQRTQQRDGTHSINNNLYLDGQAGSR 459
2 -8.880[U] KOG2887 Membrane protein involved in ER to Golgi transport  ali follow..  7  1.............MEKMAKGWFPMSGTSSSGDQQQQPLQTGGTSLLADWNSYAASRDFEEDTGTLGFDIESAVRSANDTVSGTFNVVSKGVRDNLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFII--GSFFALRGPQNQLAHMSSAERLPLTLGFTMVGTIYVSMVLHSYILSVIFSALQVIALAYYCISYFP............................................................................................................................................................................................................................................... 207
3 -7.840[S] COG4530 Uncharacterized protein conserved in bacteria  ali follow..  12  22LNRDPIVSPYTGKSYPLSFFEETSVAKVLEKEEEEDVKEVDTENTEVELVSLEEADDEASGGDDLPDLGDDDVEIEGDDDDTFLQTDDEDDDDDMSDIIGVSDEDDDV............................................................................................................................................................................................................................................................................................................................................................... 129
4 -7.400[E] KOG1305 Amino acid transporter protein  ali follow..  10  1...................................MKKAEMGRFSISPDEDSSSYSSNSDFNYSYPTKQAALKSHYADVDPENQNFLLESNLGKKKYETEFHPGTTSFGMSVFNLSNAIVG-NTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGYKAFGLVGKLAASGSITMQNIGAMSSYLFIVKYELPLVIYLNGNYLVLLVSLVVILPLSLFRNLYLGYTSGLSLLCMVFFLIVVICKKFQVPCPVEAALIINETINTTLTQPTALVPALSHYAVPILIFSFVCHPAVLPIYEELKDRSRRRMMNVS--FAMFLMYLLAALFGYLTFYEHVESELLHTYSSILGTDILLLIVRLAVLMAVTLTVPVVIFPIRSSVTHLLCASKDFSWWRHSLITVSILAFTNLLVIFV....................................... 431
5 -7.350[S] COG3767 Uncharacterized low-complexity protein  ali follow..  6  2..NKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGASKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK.................................................................................................................................................................................................................................................................................................................................................................... 102
6 -7.280[U] COG5102 Membrane protein involved in ER to Golgi transport  ali follow..  8  2.........................................EGSFQSRLQSIIQRTGETTAESTNSWYNRLRTSMPWSNDYTEIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAIACFM-LWTMGSLLAVLGFAIVQGFVAHFRQLTT--------------ERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILSFVAYLIAFFP............................................................................................................................................................................................................................................... 179
7 -7.270[R] KOG2295 C2H2 Zn-finger protein  ali follow..  6  404.AEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNL--RSEIEAVCNRFS-----YLRVAIADPLVE---------------------------RRWYRRGW----------------------------------------ITFMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRV------RPANGITAHKQVVRSDIKLCAKIALNLDEKFRLWAEGPKDDSNSARANESSENGSGSTYGF------NSQNPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERDEQLISVLDRLVLYLRIV.............................................................. 719
8 -7.180[S] KOG4638 Uncharacterized conserved protein  ali follow..  7  27IQAPISTLLEYSGLFRARPSPSHEAETLVSDDSSGLSNGEVAIRIIGNTEQDAETDTNALREPGHSELLGSSATQVDPMGGASEGASQAAPGDPAAGDAASRDSPYQ-IQQAARWIEQILPFSLLLLVVFIRQHLQGFFVAIWIAAVMFKSNDILKKQTALKGERHISALIGISVAFTAHVVGV-WHAIFIIVYPVGSFGAYSLVPIFLRYTCLYRSLLPT----PVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSVVEKLREIGNEIQVQSFFTALKALSRKEVHYGSYATTEQATCVPSFAANTCFAKIAFQ................................................................................................................................................. 391
9 -7.140[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  5  421.EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEA................................................................................................................................................................................................................................................................................................................................................................ 526
10 -6.920[S] KOG2490 Predicted membrane protein  ali follow..  10  1MGSNTSPGQADPLESENESSLTSRFLPNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKRSSSSEYPRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTV--ELLANDTVPANPIKEKHVENFLATPYAI-SFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPNRSLLKLLLIFSTSILIRKIDVSRLYHIIRAQASIRFYVLYNVLEIADRLCCALGQDVLDCLFSNHILSFNFWNPAGWMTFFYYFAISLAYMV--IITLNVTVNSYSNAVLALLMSNQLVEIKGAVFKKFEKENLFQLTSDVVERFQITIM--------------VIIIFLRNLAELYTTSSLDQPLLTFKRLKTLLAPFFWVIGSELFVDIKFNYIKPSIYS........................................................... 446
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.