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Query: [S] KOG4418 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRPTTTTSSSSSYTPWYHHIFIIFLQYSLFHISPTFGARNTVTEGGQPLTELLSSLDQPYPCGHVVEAEHFLSTAVALKFPRLIQLAHFFANHSKNFDPQLLDKSSFQQIPPFDVSFARRTHFYGLQLNCTGNNHRNLQEYRVRKAQHVSVREQDMLKYLAAMLALTITGLMAWTVGSWGDTALWRTAWPQCLMQGWHVIWHGYELLFLLYAVRLCYKARNSDWLERWQFTVAVCLEAVITLMANLIRYSIRNSGRADTLFIVSFVHLQLTVSVNIVIIVAPKFYLSNGEPSRRSMTLGGHSGRAHPSLAKLRDNILNGTIDFAEVPIADMNPEDIRAELKRVYTQLRMYKLKNLYQDNPHISKKRGGKKWSDKNTKATRRISIPSCSPQTKRIEEDEKSDLTVESSPHNIYLSNFKGVNVNSIEQHNSVRVLast
1 -132.000[S] KOG4418 Predicted membrane protein  ali  100  1MRRPTTTTSSSSSYTPWYHHIFIIFLQYSLFHISPTFGARNTVTEGGQPLTELLSSLDQPYPCGHVVEAEHFLSTAVALKFPRLIQLAHFFANHSKNFDPQLLDKSSFQQIPPFDVSFARRTHFYGLQLNCTGNNHRNLQEYRVRKAQHVSVREQDMLKYLAAMLALTITGLMAWTVGSWGDTALWRTAWPQCLMQGWHVIWHGYELLFLLYAVRLCYKARNSDWLERWQFTVAVCLEAVITLMANLIRYSIRNSGRADTLFIVSFVHLQLTVSVNIVIIVAPKFYLSNGEPSRRSMTLGGHSGRAHPSLAKLRDNILNGTIDFAEVPIADMNPEDIRAELKRVYTQLRMYKLKNLYQDNPHISKKRGGKKWSDKNTKATRRISIPSCSPQTKRIEEDEKSDLTVESSPHNIYLSNFKGVNVNSIEQHNSVRV 433
2 -9.560[S] KOG2568 Predicted membrane protein  ali follow..  8  160.................................APLVNFYVYMSLAYLLLSAVWFFQYLRFRMD-ILPLQHCITAVILLGLLEMLFWYLDYANFNHTWVVTIGALRKTVSRILILCVSMGFGVVKSTLGGLTSKVLLVGVTYFIASEILDIAESGRSKLFLVLPDAFLDAFLILWIFTSLSKTLEQ-----------------------------LQMKRTSVKLEIYRKFSNALAVMVVASVAWIVYEVYFKATDPFNERWQTAWTIIAFLLLCIICYLWTPRDANMKLMMDRYAYSGDVDEENEEAQSLTGGKQDGDISLVKQEKNAESDREEDVEEDKRE.......................................................................................... 467
3 -9.350[S] COG5522 Predicted integral membrane protein  ali follow..  7  17........................................................................................................................FSTEHVVTLAIISLLAILLFLFQDEVKQP---ASRFLRSLFVFLLLGSQIGYQIWMVATDRWSVRTSLPLQLSDLSVYLSAIMLVT-FLFFVGILATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYRMGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKP............................................................................................................................................. 198
4 -8.870[T] KOG4564 Adenylate cyclase-coupled calcitonin receptor  ali follow..  7  151.........................................GLSLATLLVATAILSLFRKLHCTRNYIHMHLFISFILRAAAVFIK-----LALFDSGESDQCSEGSVGCKAAMVFFQYCVMANFFWLLVEGLYLYTLLAV--------SFFSERKYFWGYILIGWGVPSTFTMVWTIARIHFEDYGCWDTINSSLWWIITSILVNFILFICIIRILLRPPDIRKSDSSPYSRLARSTLLLIPLFGVHYIMFAFFPDNFKPEVKMVFELVVGSFFVVAILY----------------------------------------------------NGEVQAELRRKWRRWHLQGVLGWNPKYRHPSGGSNGATCSTQVSMLTRVSPGARRSSSFQAEVS.................................... 455
5 -8.540[S] KOG4610 Uncharacterized conserved protein  ali follow..  11  150.........................................................................TTLIEQFLMLILIVG-------------------------RWLLPKG---LSQLLLVYIGTAADIIEFFDSYKDDSIAKIGFLVFLTLGIWSWSLMQFTIVLSATRGRRPRGSGSHHKEEHTDCCQNCCCGIDVWGIVLNVIL---------QDAPFLTFRLLIIFQYKIINYMNVFFTCKNS-------------------LVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSR. 458
6 -8.480[S] KOG4556 Predicted membrane protein  ali follow..  8  1.......................................................................................................................................................MSVRWLLSLLLATWTLLSIARLVFDLIG----------------NLWVVVVFFVQIVLLISGLFGATQKRR-PLLYTLLSSNALINVLIFLWYIGV-RPYLSAGLPYSSSFLIPFYSVEASQAILHIIFSIFSILVIVELRKKPIRSNSQSINHYAQICASKVAKAPSSTNNSSSGYLNSQYDDLGSSREKVKVTEKKEVKGQFERNSKKKKKNPRPEMPAPDCAPCSSNRSSEEESNLEDVYTQPIKKKIMPLRRPDLEEENRGTNVTSLVSFDPKSAT.. 299
7 -8.310[S] COG5291 Predicted membrane protein  ali follow..  9  16............................................................MLRVPPITRYMTLLISAVALLVYVDAVSPYSLYYSPLFLKRL----------EIWRVFTSFLYFGKPTLDMFMHVVFLYRYSRMLEEGCVNTSEYFWLILVISSVLFAISNIYGISALGTS----------------------------FSATITYIW-TKRNPRAIVQIFGFISFPAFYLPFILPGFMLLSRRSISIDDVLGIVVGHLFHYFKDVY-ILSTPCWVLFNEHPSSCCKARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESECS........ 348
8 -8.210[A] KOG4746 Small nuclear RNA activating complex (SNAPc), subunit SNAP43  ali follow..  6  38................................................................................................................................YKVMFENRGMVGLFTGRH------NSAEIIEFNECLLVHCLPYMEECVCPGTPRSLKERL------------------GLYSLYTF---YYIQQEKHVVKVRMDPDSSRNFR-------FAQFLLTEKIYDAYALCQ----KLLEDKAIKQVAFISIHDPSHFKRFYTDDKVSGVSIRTNGVIHKEYSRLKMKLGITSWMKLKDPIEELKKIIKTSLQAVESSSGVDEIVHTDHSAQQLASRGMQRSSIKDQAHSAALKFSRTRRHRSVKPVIVPAETFEYAPDPKKKKEAQETMPVSGRNGRK. 323
9 -8.170[KB] COG5137 Histone chaperone involved in gene silencing  ali follow..  4  1..............................................................................................................................................................................MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPL-LEWKLTYVGSATSQSYDQ-------ILDTLLVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNYYVNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEEESALANASAAEEKPEEK... 257
10 -8.140[S] KOG4102 Uncharacterized conserved protein  ali follow..  9  1..............................................................................................................................................................................................................................................................................MDSNCDLSMV-------NGQTEPKDPKWASSSTQITSRASETFSGVGSAISTETSLQPVAAPTMYCLRLAQQRPITERHVHFHAGV-IDNEHMNRRKSGESSSSTDDECEHCFGHPEVRTRNRLEKQRIQEQQNGCSCCHHHHRLHSNRNNRPPTEEIAQHK. 166
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.