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Query: [S] KOG4753 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRIQDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTYCWRHPKVRENWRTVLAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVYIWLAAKGYRGFDFYHLPLFTLast
1 -108.000[S] KOG4753 Predicted membrane protein  ali  100  1MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRIQDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTYCWRHPKVRENWRTVLAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVYIWLAAKGYRGFDFYHLPLFT 170
2 -9.660[S] COG2149 Predicted membrane protein  ali follow..  19  17..............................................................................................ANERTFLASLGFLAAGVGLDQLAPDFATPVIRELLALLLCLFAGGLAIYGYLRWLRNEKAMR.............. 82
3 -9.020[R] COG3030 Protein affecting phage T7 exclusion by the F plasmid  ali follow..  19  32..................................................................................................TLVLVIFTSVIGMSLV-KMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLL............... 100
4 -8.920[S] COG0401 Uncharacterized homolog of Blt101  ali follow..  16  30..................................................................................................KIICAILLPPLGVFLQVGIG--------KDFWINLLLTIFGLYILGLVHAIWVIARER.............. 79
5 -8.890[S] COG3610 Uncharacterized conserved protein  ali follow..  14  56.................................................................................................TGASSLAGAFVVAILSHFFAKHKKM------PITIFNVPGIVPLVPGGLAYQAVRNFVLG............. 109
6 -8.180[R] KOG1773 Stress responsive protein  ali follow..  13  11..................................................................................................MVLLILLFPPLAVWYKEKTC--------GVGVCINVVLYILLIFPAYIHAVYVCYIRDRQ............ 62
7 -8.050[O] KOG3011 Ubiquitin-conjugating enzyme  ali follow..  12  1............................MATSLQTKYTLNPITNNIPRSHRPSFLRVTSTTNSQPNHEMKLVVEQRLVNPPL-----SNDPTLQSTWTHRLWVAAGCTTVFVSFSKSIIGAFGSHLWLEPSLAGFAGYILLGSGVYH....................... 116
8 -7.930[C] COG3312 F0F1-type ATP synthase, subunit I  ali follow..  15  3............................................................................................VSLVSRNVARKLLFIQFLAVIASGLLFCLKDPFWGISA---VCGGLAVALPNMLFMIFAWRHQAHTPA.......... 67
9 -7.590[C] COG3029 Fumarate reductase subunit C  ali follow..  23  1.......................................................................MSNRKPYVREMKRTWWKDHPMVREATVLPLILFTLLTVGLGSLVKGPEAWQTWLDFMANPLVIAINLVALAGSLFHAQTFFSMM............... 90
10 -7.450[S] COG3247 Uncharacterized conserved protein  ali follow..  17  15..........................................................................................HELSSKWG------WFVALGVALLILGGIAFGNLFLA-TVVSVYYVGLMMLIAGIIEIIHAFGV................ 71
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.