current user: public

If you have questions about the server, please let us know.

Query: [S] KOG4798 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MGLMNPISFLLVTGSKISLEGISESKTSVSWEDNGFDGKPSSIRTKMNKKKCRPRVKLLLNPDGATAASNTFKATQRSMEQAGMCLLIFKLYATPRKDSPLKYPMKLDELSLYSVPKGEFEYVEEWRTQFEESISQLQHYCHQITFCTDCLDVSTKEVIFGRNQVVQGYITGQSRVVHVNLKNVLLHPFIRQGELSLPVNVAWPVFPNGINFINKHDERCIFFSSSKQFPCEFGPITKVLLNKFRTNHPQESGLast
1 -141.000[S] KOG4798 Uncharacterized conserved protein  ali  100  1MGLMNPISFLLVTGSKISLEGISESKTSVSWEDNGFDGKPSSIRTKMNKKKCRPRVKLLLNPDGATAASNTFKATQRSMEQAGMCLLIFKLYATPRKDSPLKYPMKLDELSLYSVPKGEFEYVEEWRTQFEESISQLQHYCHQITFCTDCLDVSTKEVIFGRNQVVQGYITGQSRVVHVNLKNVLLHPFIRQGELSLPVNVAWPVFPNGINFINKHDERCIFFSSSKQFPCEFGPITKVLLNKFRTNHPQESG 253
2 -6.570[O] KOG1734 Predicted RING-containing E3 ubiquitin ligase  ali follow..  27  7....................................................................................................................................................................................................ISIFTA-PTFPRKVNQLN-------YFYQLLNLKCFFRSIFKIG------HFPRGSP 53
3 -6.360[S] COG4873 Uncharacterized protein conserved in bacteria  ali follow..  30  9............................................................................................................................................................................................................VYGAGAQLFNHF---CYFFGTQQKFP----PFLSIDENQY......... 41
4 -6.350[S] COG4003 Uncharacterized protein conserved in archaea  ali follow..  19  13.......................................................................................................................................................................................TPRDYVPSKQISFLKLN----IFLLSIS-LEKSSKNNFLMLSSENYFRQFGVIIKAMTKKKKKPIDE... 74
5 -6.100[O] KOG3206 Alpha-tubulin folding cofactor B  ali follow..  10  1......MEVTGVSAPTVTVF-ISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDDCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRC----EVRAAGQSPRRGTVMYVGLTDFK-PGYW-----GVRYLGKND-----VNGKRYFECQFVKPAVVTVGDF----PEED. 238
6 -6.070[J] COG2075 Ribosomal protein L24E  ali follow..  15  9........................................................................................................................................................................................................CSSNIYQHGTIYV-RNDAKVFRFCRPKLFARRVNPRKVKWTKISRKMANKE.. 62
7 -5.970[S] KOG0472 Leucine-rich repeat protein  ali follow..  11  322....NDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTLPSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFILTFLDLRNNFLNSLPEEMESLVRLQTINLSFNRFKMLPEVLIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVNLRTLLLDGNP..... 576
8 -5.970[J] KOG1722 60s ribosomal protein L24  ali follow..  25  11........................................................................................................................................................................................................SGQKIYPRGIRFI-RSDSQVFLFLNSKYFHNKLKPSKLAWTAMYRKQHKKD.. 64
9 -5.910[BK] COG5259 RSC chromatin remodeling complex subunit RSC8  ali follow..  24  79.................................................................................................................................................................................................PVIIPSFASW--F--DISKIHEIEKRSNFFNSRFKTPKAYKDTRNFIINTYRLS-PYE.. 135
10 -5.770[S] KOG4511 Uncharacterized conserved protein  ali follow..  15  29................................................................................................................................................................................................KFLEFITSSIWPI----ASFI---ESQSVVFDRQQMETDVYIMI-SQLIDTLIECFCEDVG 87

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.