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current user: public |
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Query: [S] KOG4798 Uncharacterized conserved protein, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 | |||||||
# | Score | Template | Links and tools | %id | First | MGLMNPISFLLVTGSKISLEGISESKTSVSWEDNGFDGKPSSIRTKMNKKKCRPRVKLLLNPDGATAASNTFKATQRSMEQAGMCLLIFKLYATPRKDSPLKYPMKLDELSLYSVPKGEFEYVEEWRTQFEESISQLQHYCHQITFCTDCLDVSTKEVIFGRNQVVQGYITGQSRVVHVNLKNVLLHPFIRQGELSLPVNVAWPVFPNGINFINKHDERCIFFSSSKQFPCEFGPITKVLLNKFRTNHPQESG | Last |
1 | -141.000 | [S] KOG4798 Uncharacterized conserved protein | ali | 100 | 1 | MGLMNPISFLLVTGSKISLEGISESKTSVSWEDNGFDGKPSSIRTKMNKKKCRPRVKLLLNPDGATAASNTFKATQRSMEQAGMCLLIFKLYATPRKDSPLKYPMKLDELSLYSVPKGEFEYVEEWRTQFEESISQLQHYCHQITFCTDCLDVSTKEVIFGRNQVVQGYITGQSRVVHVNLKNVLLHPFIRQGELSLPVNVAWPVFPNGINFINKHDERCIFFSSSKQFPCEFGPITKVLLNKFRTNHPQESG | 253 |
2 | -6.570 | [O] KOG1734 Predicted RING-containing E3 ubiquitin ligase | ali follow.. | 27 | 7 | ....................................................................................................................................................................................................ISIFTA-PTFPRKVNQLN-------YFYQLLNLKCFFRSIFKIG------HFPRGSP | 53 |
3 | -6.360 | [S] COG4873 Uncharacterized protein conserved in bacteria | ali follow.. | 30 | 9 | ............................................................................................................................................................................................................VYGAGAQLFNHF---CYFFGTQQKFP----PFLSIDENQY......... | 41 |
4 | -6.350 | [S] COG4003 Uncharacterized protein conserved in archaea | ali follow.. | 19 | 13 | .......................................................................................................................................................................................TPRDYVPSKQISFLKLN----IFLLSIS-LEKSSKNNFLMLSSENYFRQFGVIIKAMTKKKKKPIDE... | 74 |
5 | -6.100 | [O] KOG3206 Alpha-tubulin folding cofactor B | ali follow.. | 10 | 1 | ......MEVTGVSAPTVTVF-ISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDDCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRC----EVRAAGQSPRRGTVMYVGLTDFK-PGYW-----GVRYLGKND-----VNGKRYFECQFVKPAVVTVGDF----PEED. | 238 |
6 | -6.070 | [J] COG2075 Ribosomal protein L24E | ali follow.. | 15 | 9 | ........................................................................................................................................................................................................CSSNIYQHGTIYV-RNDAKVFRFCRPKLFARRVNPRKVKWTKISRKMANKE.. | 62 |
7 | -5.970 | [S] KOG0472 Leucine-rich repeat protein | ali follow.. | 11 | 322 | ....NDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTLPSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFILTFLDLRNNFLNSLPEEMESLVRLQTINLSFNRFKMLPEVLIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVNLRTLLLDGNP..... | 576 |
8 | -5.970 | [J] KOG1722 60s ribosomal protein L24 | ali follow.. | 25 | 11 | ........................................................................................................................................................................................................SGQKIYPRGIRFI-RSDSQVFLFLNSKYFHNKLKPSKLAWTAMYRKQHKKD.. | 64 |
9 | -5.910 | [BK] COG5259 RSC chromatin remodeling complex subunit RSC8 | ali follow.. | 24 | 79 | .................................................................................................................................................................................................PVIIPSFASW--F--DISKIHEIEKRSNFFNSRFKTPKAYKDTRNFIINTYRLS-PYE.. | 135 |
10 | -5.770 | [S] KOG4511 Uncharacterized conserved protein | ali follow.. | 15 | 29 | ................................................................................................................................................................................................KFLEFITSSIWPI----ASFI---ESQSVVFDRQQMETDVYIMI-SQLIDTLIECFCEDVG | 87 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |