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Query: [A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGPAPPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQGMNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQNFNIIVLLast
1 -206.000[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali  100  1MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGPAPPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQGMNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQNFNIIVL 702
2 -27.400[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  15  2.......................................................................................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVG--PVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAH......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 109
3 -27.200[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  16  24.....................................................WVYRFQASSMAFCTKLGGHWKQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFN--GVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 146
4 -25.800[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  10  399...................................................................................ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYG--EIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR-PEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPGIELGRGHVLEKMHHQQQQTMDMFGQNMPFYGYSHQFPGF------------------------------------------------------------------------------------------------------------------------------------------------------DPMYGALSGNQMLAGLPNYDLNFDNRKTKKMVWFQCEDCGESLKKPKLSCIDCGEMFGRDTVQGHNQCITEAEKYGPKGQSKSANGTPAKPKDISKQEP---------------DINVGLSNRYPWFCSLCNTKATSQQTLLAHADGK---KHRGKAKAFHARQQQEQSTTLDNKDGSENASNVDSEQKKVDLPASSGVANGESHPEKKRKLETLDETSEGEEAKGSDLKKAKKQDHEKKINWKKLITSALKSNEDKTLKMKKLKKLVLESIVDSGRDKSELKAELELKVNLSSR-------FTVVKL 845
5 -25.500[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  15  1MAD-VLDI-------------------DNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 156
6 -24.500[R] KOG0226 RNA-binding proteins  ali follow..  12  148.....................................RTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYP--SFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKK................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 297
7 -24.500[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  15  53.................................QTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTP...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 199
8 -24.400[A] KOG2217 U4/U6.U5 snRNP associated protein  ali follow..  14  12................................................................................................................................................................................................................................................................................................................................................................................................................................................................KDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHHKHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREEREREREKERIREREKERLRERERERERERVRELTAPPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPATKEREPSSR...... 259
9 -24.100[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  10  35...........................................................................................SAWIFLGGLPYELTEGDIICVFSQYG--EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSES-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDRGRLQMHILAGIMGVLKGVVIEVEVGAEINPIGIKGPDAPGRGVLRIPVTVGVTEDFSCTVDLEIIMF 336
10 -23.700[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  14  32..............................................NEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCG--SVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALA-MTDSLLRGRQIKVDPKRTNK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 157
11 -23.500[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  17  160.......................................APTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFG--AVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 292
12 -23.200[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  16  2................................................................................SCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYG--RVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 94
13 -22.800[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  12  136.....................................PATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFA--PIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 272
14 -22.700[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  16  12..........................................................................DQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCG--DVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 113
15 -22.000[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  15  4........................................................................QPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYG--EILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 106
16 -21.600[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  11  103.............................................................................................TLFIARINYDTSESKLRREFEFYG--PIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWWR...... 447
17 -21.500[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  9  272.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEED...... 479
18 -21.400[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  13  2.................................................................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAG--PVVKVILRDVR--DSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 94
19 -21.000[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  11  589.TEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDLVHRG-VMENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVHFQATDDELKALFSKFG--TVTSVRRVTHK-DGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 826
20 -21.000[S] KOG4610 Uncharacterized conserved protein  ali follow..  6  287............................................................................................................................................................................................................................................................................................................................................................................................................................................................................KIINYMNVFFTCKNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDS...... 522
21 -20.800[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  11  2.......................................................................................AAFSRSAGPILSLN-PQEDAELQKEVAQCD--TVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKME............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 89
22 -20.400[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  17  217......................................................................SENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCG--DIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 337
23 -20.400[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  14  610.................................................AMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECG--HVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 730
24 -19.900[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  13  2...............................................................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFG--AIRQIRVGN---TPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 95
25 -19.500[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  11  130......RVYVGSIYYELGEDTIRQAFAPSIDMSWDSVTMKHKG-EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 323
26 -19.400[R] KOG3263 Nucleic acid binding protein  ali follow..  10  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSSSRSGEHRRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNWQPELKHGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDKMDGVKEDKDGSLEVGKSHDAMTRTKSAEE...... 183
27 -19.400[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  15  320................................................TEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFG--PVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDAS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 457
28 -19.300[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  13  360.......................................................SGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 480
29 -19.000[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  11  6............................................ATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 153
30 -18.800[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  13  1MEDEM-TLYVGNLSRDVTEALILQLFSQIGPCKNKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 200
31 -18.600[Z] KOG3809 Microtubule-binding protein MIP-T3  ali follow..  10  74................................................................................................................................................................................................................................................................................................................................................................................................................................................................QKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLSSDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNEQKDRGNRERDRDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHDKPEKKSASSGEMSKKLSDGTFK...... 322
32 -18.400[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  12  1MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVG--KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 248
33 -18.400[A] KOG0533 RRM motif-containing protein  ali follow..  17  2VKATNVDLSLEDI---------------------SKTRKTTGSIQKKSFGGARRGNTRPTGLPRRSGGSGGWKDLDAVQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYRLSSV-SVNFNE---HGDSLGTGDISLTKRDAERLVQK-FSGVALDGKIMKFAVIDSSN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 151
34 -18.300[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  12  266.............................................................PSACSPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFG--AVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 380
35 -18.300[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  9  324..........ASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYG--KVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRPAVRRPYDLDRRDDAYWPEAKRAGLDERYHSDFNRQERFHDFDHRDRGRY...... 757
36 -18.300[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  9  2...........................................................................................SVIIRLKNLPMTAGASDVRTFFTGLKIPD--AVHI-----IGGDEGEVFVGFSSDDDARLAMTK-DRLMIHGAEVRLFLSSKSEQNSVIAARKNNTYTSPVYKEYVPPVPSQPTPAQEQNPPSKPADLSNTRSLPPVNNPPPPHPIPQFPPEKQFGNKLGNNNDVSSRENHIQGSGNERVQGGDSWRDTSFNQPPRNDFKGNYNNAYSSNKYKNNYKAPEFNNDFNGGNKFNQFPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPFQNAPAPFTNGPSDDVNRPFQTGPPGNLGRNGPPPFQAGVPPPVIQNNMGRPIAPPAAMVRPPPQNFPGGAGGALPVFQAPVMTPIVPPVNKPMGAAAVEKFYIELTRLPTDLLRPA-HPTAPLTLSSVKTVFGPG-GIHMHTIIRLDSIADYATMMRRNGEQGQQSDKKSFDTAIDGIPIPSVSMVPSKEQRSHEDDDKKSRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPTR--------RMKDEESEKVRPAKLTRTFYSDGNASDRSSESLMKRSFGIRTLCTGR---IDNAKADEILKIEDVYGEGKRQMNEEAR.... 706
37 -18.100[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  12  1.....MSRCLGSEGNELIYIDEEQTMNKAGSTGAEVSDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGV--IAKIKIYRTE-DGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKK........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 217
38 -17.900[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  11  2................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYG--RIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 110
39 -17.800[S] KOG2889 Predicted PRP38-like splicing factor  ali follow..  14  154...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EDRYCDIQLPRLQKRWALEEVDMLPSYKSLLDGDLVAMSDSDSEEEEVTKKEKPRLTSRRRSRSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGLAPLER............................ 320
40 -17.700[A] KOG2253 U1 snRNP complex, subunit SNU71 and related PWI-motif proteins  ali follow..  11  8....................................................................................................................................................................................................................................................................................................................................................................................................................................................NPPSPPPFLFEKPYKLLCRASHWGIAPFFYSHSFVPSIRFISIILKLLPLLMNTNEIAIDAAAVAQGAEKELHDDREAKNRPEASKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRTPQRSRTSKRRRSNSHASEDSDDAREKRAFKQMMLDKKQAYLARLKRWESRERQMSKRYEREERKEKDRKKTLQKEGKRLKLFLEDYDDEKDDPKYYTSSQFFQRKRDYEREREADQKDRMQEQQEIEELKRQIMEEAANDE...... 267
41 -17.700[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  21  2............................................................................................VRVYIGRLPNRASDRDVEHFFRGYG--KLSDVIM--------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 74
42 -17.600[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  14  144.............................LEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFG--KLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGPPT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 317
43 -17.500[R] KOG0118 FOG: RRM domain  ali follow..  11  119......................................TSAGSFFRNNGFAGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCG--QVVDCRICGDP--NSVLRFAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCART.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 271
44 -17.500[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  15  2............................................................................................SRVYVGNLDPRVTERELEDEFRSFG--VIRSVWVARR-----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 80
45 -16.900[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  11  19.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EGNYDPTDHQRQMEDYYKQYEEQRQVANSFHNTTGRPDLVAMQARLAETEQAIHRLNEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRS---LSNNDRYSDWNPGVPSNKLAI. 228
46 -16.900[A] KOG0796 Spliceosome subunit  ali follow..  14  202.................................................................................................................................................................................................................................................................................................................................................................................................................................................................MVDEAQKALEEAEALKKLTARQEPVVDSTKYTAADVRITDQKLRL---DICGAFLSV-YDSDRRLADHFGGKLHLGYMLIRDKLAELQEEKNKVHKERVEERRSKERSRERESSKDRDGGDNRDRGRDVDRRSRDRDRHHDHREHDRNYNQSRGYDSRSRRSSRSRSRERPRDHDRRRRHDR....................................................................... 380
47 -16.700[T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain  ali follow..  9  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGRRSKSRSKRNRSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEEREFYNA...... 184
48 -16.400[R] KOG2140 Uncharacterized conserved protein  ali follow..  11  656...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AQKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRREKSPAKQK...... 908
49 -16.200[R] KOG2888 Putative RNA binding protein  ali follow..  9  226..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGRSTAGTGGGPGAAGQDADYQDYPEGGVERGSGGRGGGQAGSRSNAYPQPNNYRNDYDERDYYAAASGSSYGRGRGGYEDYPPAPLPPQPYGERERERDRDRDKNKDYDRHRSKHKKKHNHRQSSRSRSRSRSRSRHRSERHERKRDGGGYERSSKSRHNEHYEERERRH................. 397
50 -16.200[K] KOG3794 CBF1-interacting corepressor CIR and related proteins  ali follow..  8  436.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRVIGEQVRKSMSLIHRRLYRISGLSSVNAWNLQIREAVNRNDPVES...... 642
51 -16.100[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  17  10.............................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAG--PVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 108
52 -15.800[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  10  2....................................................................................LTADIPPNQSIYIQNLNERIKKEELKRSLSQFG--RILDVVALK---TPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 157
53 -15.600[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  15  100......NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG-ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERIS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 289
54 -15.500[R] KOG4733 FOG: RRM domain  ali follow..  17  23.....................................................QAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYG--KIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNL.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 143
55 -15.500[S] KOG3869 Uncharacterized conserved protein  ali follow..  11  198..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KKNKKNKKSKKSKKKKKNRRSSNEESSDSESNDSDDDLDRKLARQVSKLKGDQGDLKLDKLLDAKYRTISNQLDMATKKKKSKKSKKKKSSDSSDESSDEEEEPRRKHKRSHSSEDRNQRERRRSRSPRDRKKRQSRSPEQRQRQRSPEERRERRRSRSRSPLARRQRRTRSPEDRKARRQS...... 379
56 -15.500[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  12  115.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QFKEEDQAAAALQAL--QGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA............................................. 296
57 -15.400[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  9  6.......................................PDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLML------KGKNQAFIEMNTEEAANTMVNYYTSVTPRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 167
58 -15.300[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  12  285........................................................................................STTGHCVHMRGLPYRATENDIYNFFSPLN---PVRVHIEIGP-DGRVTGEADVEFATHEDAVAAMSK-DKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 423
59 -15.200[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  10  185...............................................NEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFG--EIRSIALV------PRQQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDLAGIPPPSAKPNDYFNLRQEQINVMPAGMKLHQLPSNLVPASAYQMYGQPTYAAPYGNATSTALSSSGVNLDSISIPPPPGQVPYPSQDASRMGA................................................................................................................................................................................................................................................................................................................................................................................................................................... 413
60 -14.900[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  9  350..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD...... 531
61 -14.800[S] KOG2812 Uncharacterized conserved protein  ali follow..  12  123..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDRTKAEEPSDLIGPEAPKTLTSQDD...... 304
62 -14.600[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  15  48....................................................................................DAAPPERGCEIFIGKLPRDLFEDELIPLCEKIG--KIYEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLF........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 139
63 -14.300[R] KOG1995 Conserved Zn-finger protein  ali follow..  16  225.....................................RGGYGSDAPSTGGRGGRSGGYDGGSAPRRQEASYEDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQ--PYNIKIYTDE-KGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 372
64 -14.200[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  7  51..................................................IIQWDHPPPPCHRHHHHHTYPNLLQDTVSVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFK--GYEGSLI----KLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPEN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 159
65 -14.000[R] KOG2295 C2H2 Zn-finger protein  ali follow..  7  262..............................................................................................................................................................................................................................................................................................................................................................................................................................................................KLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVQPRALHRTSSIFL. 519
66 -13.900[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  17  1MSGARRD-NDRKPGRENRGGDEKRGNSNNAARSGGGGGGNRGGAERGYDNNGGHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHG--DIAECYL-------SGKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 189
67 -13.800[T] KOG2370 Cactin  ali follow..  9  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MGKDSKKHKKERRRERSPSTSDSDEERLQKRLAEQRSLKKDEKRRQKEEMKKNESAEEKRARRMEKKMRKDAKRKDADAEDTLIPPELNYTNLNNGKKLEREGKSGLTQDEITKQTSQRIRKNLHEAAEFKRIRDSRAAAKEDMEMMKRDADLRAGQISDTKEREFQMDQIKERTRIRIDQGRAKAIDLLSR 205
68 -13.700[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  16  322.............................VQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKRCNLINSSPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGDFAMVKFQGVHMVYNN-QGHPSGEAFIQMINEQAASACAAGVHNNFMKKRYIEVFQASAEELNLHHLVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISPIVPGQ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 522
69 -13.400[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  9  552..................................................................................................DPLWWVGDCQLPIACEMFLDAKGTEINFILHMCSLFDYGLI-----AAETVYKTVQKLQGEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRPPPPPPPQ............................................................................................................................................................................................................................................................. 955
70 -13.300[S] KOG4051 Uncharacterized conserved protein  ali follow..  7  244..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SQRLKRSKEVKFEDEEKEEIEEDNTKDEEQKEKKEEIQEPKITHNEEVDKEKNENEEGDDEREKSTSYENTNGSESEGVDEGVDEELGYESEREAEGKGKQIESEGGNLKKKTENKKGDDQQDDTKKDSKDKNEPLAKRTRHSSSTGNTSNETSPKRKRRKAGSRKNSPPATRVSSRLRNKK...... 425
71 -13.200[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  9  2............................................QSEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYG--ELGRIYLRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKK......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 141
72 -13.100[J] KOG2147 Nucleolar protein involved in 40S ribosome biogenesis  ali follow..  8  140...........................................................................................................................................................................................................................................................................................................................................................................................................................................................EPGNLGSNMVKVAHFGGGEKTAEEHVREKISREDMISNLIAKTKLARHEKQQQKDELELMTESLDSKYQALMGKM-KASFRPTGRQPLEKDDYDKLTITLKTEADARATPADRKLSEEEEALKEKERLETLEAAPDADVDIDAGSKADARKVQAKNSRFEVKFDDEGGLIDEDTVEKSRILKKNLDGSDESDDDEDLEDEEEDLDDLLEDEDELEEDSDDEEAQEAQKVVKKAKKSAPEPAETLPFVFEMPKNYK.... 393
73 -13.100[R] KOG2030 Predicted RNA-binding protein  ali follow..  10  640................................................................................................................................................................................................................................................................................................................................................................................................................................................................DSFIERHLGERKVRSLEDDQIDPNVKENEVEHDLLSDNEDADSNINLSEPSSNTEITAFPNTEVKIEHDTGRIIVRSDSVNPEIEETKESEVVLDKILKKTDDEETTIILAGPSRKKQVSAKKTKEDKARAKQEAAKQEVPPVSSEPKNPSQVKRGQKGKLKKMKQKYKDQDDEEREIRMMILKSSGKEKPQASADKVVEKSESTKEYVKPEKSAAPKNPVELDDADEVPVGQPHEGDIPAPYQALQNYKFKV. 910
74 -13.000[R] KOG4520 Predicted coiled-coil protein  ali follow..  8  109..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DPEEKGVDRLLGLGSASGSVGRVAMSREDKEAAKLGLSVFTHHRVESGGPGTSAASARRKPRAEDQTESSCESHRKSKKEKKKKKKRKHKKEKKKKDKEHRRPAEATSSPTSPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSEA................................. 263
75 -12.900[JU] KOG2153 Protein involved in the nuclear export of pre-ribosomes  ali follow..  11  10.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AIKILTSFFKIILRGVKINDYFAENMGFASASREEKLKMLKTNKTRKTTKHLNRLAKRKKLSREIRDGMADIKSRKSADLRQRAVNIEDDFIADRQAHYENSDEDLPLDMMDADIDWENSAFANAKRRLEKKRSGVESDSDDEDDVEKKKRKFAGLLEERPTREKEVKEDEEEKSGDEEEEGEEDEPHREDFSHLSASELIAKRRELMQEFKDTSNPQV-NIVRL 258
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.