current user: public

If you have questions about the server, please let us know.

Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400
# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -112.000[S] COG5613 Uncharacterized conserved protein  ali follow..  100  1MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTV 401
2 -5.800[S] KOG4823 Uncharacterized conserved protein  ali follow..  23  10.....................................................................................................................................TTKRKHSLGNLRRAHPASGATWNVQRGKMSSKCL-W-HACRALILGLTLMLLGLGYYADHLSMGSELRGNVTVRVKNDLKGFHLNN--FAYVGPIVMGFGGFIVVASCVMTFEASAAKVV.................................................................................................................................................... 134
3 -5.550[S] COG4575 Uncharacterized conserved protein  ali follow..  14  9....................................................................................................AAKDELLAEFQALVADTEKLLQSTA-DQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEVYVGEHPWQSIGIAAGVGFLLGLLV.............................................................................................................................................................................................................. 106
4 -5.450[O] COG5264 Vacuolar transporter chaperone  ali follow..  16  100...............................................................................................................................................PPHIKKPEIPLRVSGPIKVEAKVWKWLHV--VVLLGSLALAERLGQAFGVVYTLLAIFIGFYAWKLHAKRSQMIKSRS-DYWGPLIVGTALAISLI.................................................................................................................................................................. 211
5 -5.270[C] COG3038 Cytochrome B561  ali follow..  13  4.........................................................................................................................................................KGTAERWDWMSQALHWLIAV--LILGLGIGGKSTGISVLALAVLRLLWRLYVGAPKPIAGPPVWQERVANATHIMLYVLIFTIPLAGWLYDSARG......................................................................................................................................................... 115
6 -5.020[S] COG5642 Uncharacterized conserved protein  ali follow..  13  43.............................................................................................................LERVAHLLAPGDAQFKYRLIPKATYERRKM--AHRLSSDEGTRLARVARVWGLAVDVWQFLFRPHPMIEDKRPIDVVILSEFGAEIAVDILGSL...................................................................................................................................................................................................... 141
7 -5.010[S] COG1808 Predicted membrane protein  ali follow..  13  52............................................................................................................EVGKVIEELQDLP--IPTGVMALQPPASEAPQQVVDVEERSPIEILLSGLQSVGSWQGFLSYAALAGFVVWIGLYTNTTYLLVAAMLIAPFAGPAMNTAIATAWGDRSLLGRSILRY---FAALTVTIFTTAVILPLAAGAAGALNLVQSERSSLVSGAATGML-VAASLAPPAGIIGMASAIGRWDMVISGVFLLFLQLCGINLSAA..................................................................................... 284
8 -4.980[S] COG4905 Predicted membrane protein  ali follow..  8.................................................................................................................................................................IVYSFIGWIWETFGFLLGPYCPVYGFGVSA-TIVIVTVVEFIGSWILEKFFNM--YSTLPFNIEGRVAVPVSLFWGVGCIILI---------------VNPPVQNWIHDFNELTHSWGVILILIIFLADLVS----------TFIFTISTKKEVLAMIDDSDKENAAIKEFCLKHLFANHETAANRIKVLELLKNKPLKLKHYNLRRILKNYPNMNLTKKR................... 235
9 -4.960[S] KOG4619 Uncharacterized conserved protein  ali follow..  18  51............................................................................................................DAMEIASRLTIIEQQMLKSAL--------DDCLTKKEDGKVEELTQEQVKGIFLVNSIFGVLDNMIMILAG--YIDQKLGAVLAISTMAAAALGNLISDIAGVGLAHYV-EVAVQRVGPVLTSQQLDSGKARFTTNAARAA----LTVGCLLG............................................................................................................................................ 197
10 -4.800[U] COG0811 Biopolymer transport proteins  ali follow..  19  88.............................................................................................................................FKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESLENRV-PFLATVASVYIGLF------GTVWGIM------HAFMALSGAKQATLQMVAPGIAEAL--IATAIGLFAAIPAVMA.............................................................................................................................................................. 192

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.