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Query: gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIKDTYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIVYRLYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIEYVFIGKKDSEGNIEFYDPKNSLLIENDDIKKYLYDEDFHRFCIMLIISKSELEELSRESCDQECIMGLast
1 -6.210IDP02136 gene: metJ; transcriptional repressor protein MetJ [Yersinia pestis CO92] YPO0114 [Yersinia pestis CO92]  ali follow..  17  33...........VLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDPDTWEY.................................................................................................. 105
2 -5.840IDP02051 putative cytoplasmic protein [Salmonella typhimurium LT2] STM4141 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  33  10...............................KNCIKCSIAHILRYKRQK..................................................................................................................................... 27
3 -5.490IDP00917 putative copper chaperone STM0355 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  9................................TCGGCTILTLDANATVRTDPATRLVDVETSLSAEQIAAALQKAGFPPR...................................................................................................... 62
4 -5.330IDP00763 Ccholoylglycine hydrolase family protein SACOL0262 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  48...QTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNELVYTTSIEDMKQQASQIHVVAVYLNDI--------------GEVPPLHYHVSDATGHTVEVSFKE--GEVVIKDNPIGVLTNHPDLNWHY.................................. 181
5 -5.200IDP01063 gene: grxC; glutaredoxin 3 STM3702 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  9..............................KATCPFCHRA----------------------------KALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPL................................................... 81
6 -4.930IDP00451 gene: yopT; Yop targeted effector YPCD1.20 [Yersinia pestis CO92]  ali follow..  6  139.................................CEALCAHWIRGQSLFDQLYVGGRKGKFQIDTLYSIKQL-RPVDVTGTTESEGLDQLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEK-SGVTFFDPNFGHFSDKEKFRKWF.................................. 292
7 -4.870IDP01108 copper-ion-binding protein BA_3860 [Bacillus anthracis str. Ames]  ali follow..  14  12................................SCGHCVNAIVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ...................................................................................................... 68
8 -4.860IDP00447 gene: yopJ; targeted effector protein YPCD1.71c [Yersinia pestis CO92]  ali follow..  9  1........MIGPISQINISGGLSEKETSSLISN----ELKNIITQLETDISDGSWFHKNYSRMDVEVMPALVIQANNKMNLNLVTSPLDLSIEIKNVNGVRSSRFIINMGEGGIHFSVYKHINGKTSLILFEPANFNSMGPAMLAIRTKTAIERYQLPDCHFS---MVEMDIQRSSSECGI. 174
9 -4.810IDP91474 putative targeted effector protein YopP [Vibrio parahaemolyticus RIMD 2210633] VPA1346 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  9  27......................................IDLMDDAIRQGKQLPKDTAAANDIALMDDFIAIANQKKEGLNAHFFRSPLDMVNYVKSLSEDTTARFVVNMGSGGIHCIAVDCAIKNGKCSLI----DPVTMNSLGASMLAIRLQSVCKRELPETSLVIMETDMQRSQGECLM. 169
10 -4.440IDP06049 (dimethylallyl)adenosine tRNA methylthiotransferase [Helicobacter pylori J99] NP_222975 [Helicobacter pylori J99]  ali follow..  9  147............................GCDKKCAYCIVPHTRGIPMDLILKEAEKLANNGTKELMLLGQNVNNYGVRFSSEHAKGFSDLLDKLSEIQGIERIRFTSPHPLHMNDAFLERFAQNPKVCKSIHLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEV------GISTDIIVG 301
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.