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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -7.880sp|Q9BPW4|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3  ali follow..  10  91.............................................................................................................................FPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGSTGILSVIGMLAPFTAGLSLSITAAGVGLGIA-TAGIASSIVENTYTRSAE-----LTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVLVVLDV-QDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKA..................................... 329
2 -7.590sp|O95236|APOL3_HUMAN Apolipoprotein L3 OS=Homo sapiens GN=APOL3 PE=2 SV=3  ali follow..  13  156.............................................................................................................................FPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVSSSTGAASGIMSLAGLVLGTSLALTAAGVGLGAA-VTGITTSIVEHSYTSSAE-----AEASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDLVYESKHLHEGAKSASAEELRRQAQELEENLMELTQIYQRLNPCHTH................................. 402
3 -7.510sp|Q9BQE5|APOL2_HUMAN Apolipoprotein L2 OS=Homo sapiens GN=APOL2 PE=1 SV=1  ali follow..  13  85.............................................................................................................................FPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLGISFVLLGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSNVAKVMKEFVG--GNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHIIGRISAEGGEQVERVVE--GPAQAMSRGTMIVGAATGGILLLLDV-YESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ................................. 337
4 -7.360sp|Q9BWW8|APOL6_HUMAN Apolipoprotein L6 OS=Homo sapiens GN=APOL6 PE=2 SV=1  ali follow..  10  46.............................................................................................................................FPRLKEDLKGNIDKLRALADDIDKTHKKFTKANMVATSTAVISGVMSLLGLALGGSLLLSGLATAAGVTSIVSGTLERSKNKEAQARAEDILPTQEDREDEEEKA--DYVTAAGKIIYNLRNTLKYAKKNVRAFWKLRANPRLANATKRLLTTGQVSSRSRVQVQKAFA--GTTLAMTKNARVLGGVMSAFSLGYDL-KEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQQKVRSRARG............................. 302
5 -7.200sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5  ali follow..  10  117.............................................................................................................................FPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLGGSLVLLELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKDKLKEVREFLG--ENISNFLSLAGNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLVLDV---LVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQADQE.............................. 370
6 -7.180sp|Q9BWW9|APOL5_HUMAN Apolipoprotein L5 OS=Homo sapiens GN=APOL5 PE=1 SV=1  ali follow..  12  106.............................................................................................................................FPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALGGSLMLSGLGAAAAITNIVTNVLENRSNSAARDKASRLGPTSHEAFGGINWSEIEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEGTTL------AMTNGAWVMGAAGAGFLLMKDM-QSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQTCSSSRG.......................... 363
7 -7.150sp|Q69YZ2|T200B_HUMAN Transmembrane protein 200B OS=Homo sapiens GN=TMEM200B PE=2 SV=1  ali follow..  14  5............................................................................................................................SPEECGEVRRSPEGRVSRLGRRLGRRRRPRSPPEPLRVRARL-------AFAALGALVVLVGMGAVAGPHRAGAPGSRAANASSPQMSERAHGPHERLRLLGPVIMGVGLFVFICANTLLY............................................................................................................................................................ 137
8 -7.120sp|Q13491|GPM6B_HUMAN Neuronal membrane glycoprotein M6-b OS=Homo sapiens GN=GPM6B PE=2 SV=2  ali follow..  12  1...........................................................................................................................................MKPAMETAAEENTEQSQERK-GCFECCIKCLGGVPASLVATILCFSGVALFCGCGHVAAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLATSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTK.... 264
9 -6.780sp|Q8N0X7|SPG20_HUMAN Spartin OS=Homo sapiens GN=SPG20 PE=1 SV=1  ali   12  121..........................................................................................................................................................................EKVAHNILGASWVSWGL--VKGAEITGKAIQKGASKLRERIQP----EEKPVEVSPAVTKGLYIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQ---KYGYNAGEATHHAVDSAVNVGVT..................................................................... 300
10 -6.320sp|Q8WUH6|CL023_HUMAN UPF0444 transmembrane protein C12orf23 OS=Homo sapiens GN=C12orf23 PE=1 SV=1  ali follow..  16  1................................................................................................................................MNQTDKNQQEIPSYLNDEPPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGA-----TIGGVA---WIGGKSLEVTKTAVTTVPSMGI-------------LVKGGVSAVAGGVTAVGSAVVNKVPLTGKK.............................................................................................................................................. 111
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.