current user: public
If you have questions about the server, please let us know.

Query: gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFSLast
1 -4.520PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  10  163VRYVHHTASMIEGIMLQKDKNAAEKSVFIQVEQYFLTIIVKQGKKLIFCNSFTNTSEDFVYFILFV----------QLELNPEKCPVVVFGEITHDSESFSKLYKYIRHL.................... 265
2 -3.070PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;  ali follow..  10  40MPEKEHIHKIMCEHLGTDCFCYDGNMAGFAPQKYSVHYEKEKLNQLIIMNCSEIEKPIMDDVSATQLWNCPNGGEIL----ETCKYQVMATDMLAAGLDYKERAEMLVNYVEAL................ 153
3 -3.040PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  8  157.KKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKARSNE--------KLNREHVIKYAELEL---ASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLK............ 262
4 -2.980HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  3  1...............................................................................MAQQKNEVQSLLEKAMFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGI 51
5 -2.480HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  9  27.KDTLLKIEMALFPLHVRLRRVAKEDYVQPLGALA----DELSDTLFVFAFFSDNRLNQALAALRKSGAGTFPYKAILTPTNQN-----------------NALQCFSEIRREHETIQKQLKGNKEQAEE 149
6 -2.200PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  11  93.SKYELLMKQKSTVSGSEVYVNRKG----KVKE--LIMVMNGASSLKFVYMEGDMTTDDIKKLML................................................................. 151
7 -1.990HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;  ali follow..  5  12......................................................IQQEIYARMIMYNFVQMITSHVVIVKKQRKHTYKANFSVATHMCRLPNLETIIAKNL................... 76
8 -1.770PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  7  124VEKAQHTLSAGFPQAEINL----AGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTM............................................................. 188
9 -1.660HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  11  30......................................................IQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGERFRS 105
10 -1.600PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  14  42........................................................................................LTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRN 83
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.