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Query: gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKNKGIVFPPFSINIANIFVPDLSGANRFLACSLLEFLTYLSSVLLLMLWKILNIYIYGLMQHSRNQNIIAKRYIVYTVLFILKTANIRANPVTLSPLast
1 -5.190PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  23  1.........PAFLLPLEAMEYEINKGAGNPLEFKGLQYLFIFAGGLVAVLLVVVILYIAGVNQW.................................. 57
2 -4.750PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  20  2...NEGI---PEQL------IRRLSDASRLVPLALL--------AVVAAVIYVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMG...... 73
3 -4.130PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  16  4...........LSLKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKVQKLGKKELIRQLDIAEANHCLSFEQVSDEII...................... 74
4 -3.720HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  26  57......VVFPAIDLILAVFFFAKLGGQFEWAAPAILFACLVFTLTAPMYLWSIIGI.......................................... 115
5 -3.710PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  19  4.....................PVCSPWGRF-GCYLLLFAC-------IIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELE... 70
6 -3.480PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  14  60IDSNIG----QLLKTDAKFYAIHVSPSEKELQAMGNTEHEQAESMKRYIREVFIPEYAKNFNKGLSEADIKFYGKIHFN-CHLIVSRKDQSNKKKLSP 163
7 -3.090PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  10  33..........PRAVTWRALGYFAAVEAGLVAFRFLPPFKWIFGDMI-LMYYGVIPLFLVWGADKYKTDGKSLFSFVRSWITFRLRKHQS......... 114
8 -2.780PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  17  191......IQVEQYFLTIIVKQGKKLIFCNSFTFNTSEDFVYFILFVFLELNPEKCPVVVFGEITHDSESFSKLYKYI...................... 262
9 -2.480HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  22....................................NYFSTVVFIFIAVLLLAFIIDLFSIISTKQELDHAADQMV...................... 61
10 -2.480PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  22  111..........PVQIKLAPVNAPYFDGAKLLIACPKLDSVDYSEKLTEII--DIQSVTIVGLEMAAKKALQDSGKFIPWQVATISIDGRI......... 222

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.