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Query: gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSLLast
1 -5.820HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  13  16...........................................................................................................................................MFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKACGLLDDATLQC............................................................................................................ 88
2 -4.470PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  8  1........................................................................................................................................................................KMLSYVTPGFYDKSYVGKWMFQVMGLEYDKALK--LAEELPEQFFPETATWGLCWHEIKWGLPVQENLSYQERRQAIYEKRDYHSPMTPYIMERYLENATGFTVHIADCHDAGPLKYKPPHPVFKAFFNGDGTLDSKKVRKLIDKLKESH.. 149
3 -4.370PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  12  5............................................................................................AKVSLEILNYAEFASVTELYTDGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWV-DSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENDAKEILHLAKG-NFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLE.......................................................... 189
4 -3.030PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  7  49.......................................................................................SRDAVDKTLQRLTKAEA----LRRIDRGLYIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFRPTAASKLFWAGRPAMRVVQALHWLRDLLVRDGESEQRKLAKLFEDPAVGPPLKADLAAGMTALPTWMLVFLKPLIETDPDDRGQHPDNVHAAADQDRQ................................................... 248
5 -2.310PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  10  7.....................................................................................................................................................................................TEELQNLGNAGKDNRQRVANIVLENKELFETFQVDEPISVKAAWVLEWICTHHQLSWMFFTENLKNLTFDSAIRPCAKICEHLANAYYSKRDNEFKSKPQKIAVRAYTMNTLYLFGLENDWVHPELKHLIETKIIHES. 173
6 -2.240PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  8  31........................................................................................................................................PLEWTALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKL-SMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFN-NVTAGMLDRDNGEAARMALSHWHR.... 225
7 -2.220PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  9  2.......................................................KKEQFEFNELPYPTLAR-------TQEMIEDLPLCILKEIG-----KGGYSPVL--ESRSRFAFIRMDSGEVDVVFYPTLKSSPLECYNEEQQKQLLDGKSIIADVAM-ADGRRSKAFVQID--ETKQVMYVPTPIIARNLKVLAEVMHLGTVEVNGMQHGEPLTVA.................................................................................................. 167
8 -2.180HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  12  25.......................................................................................................................HTEGRCSSIDENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRYCGRLHAERTGAQGVLEGTLGVFGERLGRLLLKLAVEHNMTHLLGGDMDMTRDEYSKMRGSSVREVSATHGTIS............................................................................. 156
9 -2.120PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  12  2....................................................................................TVLSLKEVKLLMNDTQKNDCLIEFIGRKTKNRRSII-GKKELIAEANHCLSFEQVSDEIIEYFNIQEGDFHTKYNVPSVQAIGKVYHRLIISIISEQDNLVDVLFEVFNSFISDEIS....................................................................................................................... 135
10 -2.070PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  16  266.....................................................................................................................................................................................TETLARVY-VEQKNFSKAKQAYR---ILSLKYPEKSGFFADQIRAIEKLQEN....................................................................................... 313
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.