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Query: gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRALast
1 -4.490PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  13  1...LEKIISISRPGLFEVHTQTRTGV---ATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDI--------------------KKIIQW.............. 114
2 -4.300HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  14  58VKGLAGFLGTSVSTVNRWKACG----------------------LLDDATLQCGKVVELPKVIEILRVSDKKNKFNVKSKKYNGKESN................................................................ 125
3 -3.440PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  5  30................................VMLIGAICFATMQMRQQYLGTNLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILL----------IATALEVYTLHRIDYLIEKE......... 130
4 -3.080PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  25  1.............................................................................................MLRR----SVPKSIW----TPPRKRRKWRFTV-------RR--SWAATSKPPSGNLPKS 44
5 -2.760PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  9  60........EVMFGGFCQLIQNGYGGYI--FDNPFAKVMRLWGAEDFSKLVYK---------AKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVT----ASYVDDHLE--FAKIV......................... 165
6 -2.430PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  10  25..............YLEHEDLERMEKGLYTDSFFNLTENNIYKSKVIKDIDSNIGQLLKTHVSPSEKELQAMGNTEHEQAESMKRYIREVFIPEYAKNFNLSEADIKFYGKIHFNRSHSD-MHCHLIV---SRK.................. 153
7 -2.300PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  17  105AAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE..................................................................................................... 155
8 -2.270PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  10  238................................................................................YADAAPNSDNVYTTFDLDWAVDSDNPKHLDHADFIRIQSGVLQQCGWTGETSTEVGR............... 295
9 -2.230PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  11  1.......MSSDIVNWDPQFKPVKGIYEDRLRQ-FIDNGGDYRDLNLPKFYDRQRKRIDSTRVKVYYQVPYDRHKPPVAPEKRPPWEEVVRRDRAGEIEWKDVYLGQPFGPSWSTT-----WFKVELDI........................ 116
10 -2.150PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  5  9..QFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGS-----------------------------------------GLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLI-WSGNNPVGYN..... 113
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.