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Query: gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKITTLIICSKPAEIAVGHFITMSIKAILLYSYQEYGQHTDVFIQVKFNYGMIEYKFYVNKVKFDDTPDRKLKTTIAHSSQLMGHNLTYEDYAMKKRLVIATALCAAFYAGMKVEHFLTVDACLDAGGAMQNDIFCERLast
1 -4.020PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  16  3......IYIFNDSTNIPIGTVFSFVSKYDYICN-KAVQDISEDLIKIELNQNVINKIFNILKAS-NTQNLRKKHAPIKVLINRKNFNLYQXX............................................... 91
2 -2.920HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  20  1MFSLLLSTFAMMGLTFVIGFFVAGVIKLIASASLAFYSSHQEELARLK........................................................................................... 50
3 -2.910HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  17  2.............ANYATNIFHARTIEDFLDDTFSEFTNRYGDSVDAEFS----------SRWVYPEEEIKKLVESLEDKDKVYIKILTYE................................................ 77
4 -2.770HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  16  31....................FLVDKVKDELVIDLLESGETDTEVIQETLDINDLQEEFDENDSEIETVARDCIGVTVAYILEWFGIPIDIEEAIRER.......................................... 114
5 -2.760PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  17  15..................................KEYGKNIQKIVD------------WILTIEDREQRTRYANTCVELMRQLNPGVRDTEEH.............................................. 61
6 -2.690PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  8  1MKRNYFFTMLEFRPAELAGIWQLCHYVSE--IVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLKYF............................................. 130
7 -2.680HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  20  1....................................................MTPYKVSHQLKKLNN------------SSSLTKKNMTMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDLLEVG........... 64
8 -2.650HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  6  99.............LTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNK.................................................... 172
9 -2.640PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  11  236LESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEII-ETVEVDLRTLEVQCHGKHNQ---DTEYHERIIDLVNKNANLIRERMK.................................................. 321
10 -2.610PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  13  1MKTVFNIVLVL--CAAALIYICYSSIMGPINFEKAKKEREQAVIARLIQEYRSLHHGMYTEH--FDT........................................................................ 69
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.