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Query: gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFELast
1 -0.925PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  4...................................................................................................................................................................................................................................................FASHFLFLPAYGYLKQYAVETEEGSVVRIFPLTEEIENVEWLPGAIVLLTQDELKELDTNSPLVNAPQNYSKTSAEFYYNSTRILVKFPQNLLMALPPSIEGRCQLLPVYFSNFDITTMLPAAGTRHRL..................................... 132
2 -0.790PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali follow..  12  5....................RSIHEIINTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDENRLKILIEKEINFVELDARFLDFFELLLEANEEINTAEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLRVTIRNIINLQH-NAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSN----LSEIMERERSLLLEGNTQASFKLSPSYLAS................................................................................................................................ 285
3 -0.694PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  1..................................................................................................................................................................................................................................MNRLGKIVFGLGIAVCLFSATNSIAQVKTHSSLRAENLEVILVKDIQHISDTTHHTHAHDPHKSSYKIL----VNFMLVSSDPSVTGYKSVMMRLIDPHGVDIYD.............................................................................. 102
4 -0.635PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  10  19........................................................................................................................................................................................MWQIEDIIRVYGCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLASSKFPFYSAEYYRVLPFIVELRGKTKQVADRMARKNEANLKEIAANL---------GHSEVETCFDVLYGV--MMLRLQKKEISRETETAVKEITTLIGMLSDYYQKDKT...................................... 194
5 -0.439HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  10  1...........................................................................................................................................................................................MAKPKNLEQLR-----AEKEQVETQLAQEQHKLKRLENRKKYLEKGERQKRTHRLCNLGGTIESLAPEFKDLTRTEMTEEYIFSLPEVQRAVRHMAITHINQASRGKEQKADGNIPLHRH...................................................................................................... 117
6 -0.262HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  12  8.....................................................................................FDELLERIRDIRASEKRV-------RKVKEIFALSVDYD--SKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKLTSFKGVKVRRGDVTVAKNYMTH-EEISTLNLIVNMYLDYAELQAKGHIPMHMADWELRFNGREVLENFGTVKREVAEKLALEQYEQY----DTHRRALEAADDVDELTADVKRLKR................................................................................................................................ 200
7 -0.193PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  73................................................................................................................................................................................................................................................................................................................GKQTIKQLNAQGVQLSNIKITDENIKSFDRVARK....................................................................... 106
8 -0.126PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  2.................................................................................................................................................................................IEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLAYDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHL................................................................................. 158
9 -0.112HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  15  12..........................................................................................EMMTVLVVEPMKAPYVKHIPNELEDLQAVGGDIEMTYPFDDEVGILLNGNGKFEGLP-VVGLTEDDFTSLTPEQIEKFKEKYQSPEIFTLFNGELHVMK............................................................................................................................................................................................................................ 131

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.