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Query: gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVVLast
1 -4.290PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]  ali follow..  242.......................................................................IAEKKEILRQITELTKQNNSLKKEHKKAINFSDKANLNMQIQVNRKSIEDLENK..................................................................................................................................................................................... 295
2 -2.670PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  10  91....................................................................................................................................................................................................................................GAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAKIV... 165
3 -2.510PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  2...........................................................................KRKVKSIRKTMWGVYWKLHDKRKRLVE-----------RLKGYLDGLPPETCRRIVLGML-----AAFAVLALYTFGRAAYDIGRNDGSRMETG......................................................................................................................................... 79
4 -2.510HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  28........................................................................KDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCIGGAVESVL....................................................................................................................................................................... 95
5 -2.470PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  10  35...................................................................................AICFATMQMRQQYLGTNLTIRRLRKIMVLADI--AGLFMVEDSYGFVKQYLANSIGGLIATALEVYTLHRIDYLIEKE................................................................................................................................................. 130
6 -2.420PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  15...........................................................................DTQKNDLFYVCCLIEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIEY-FNIQEGDFHTVESCK......................................................................................................................................................... 91
7 -2.210HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  4.........................................................................................YKVSHQLKKLNNS--SSLTKKNMTMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDL.............................................................................................................................................................. 60
8 -2.200PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  11.................................................................................FTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITN......................................................................................................................................................................... 66
9 -2.140PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  18  47...........................................................................................................................................................................................................................................QLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLKQYSDYLRLMALTLRN..... 114
10 -2.130PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  11  15.................................................................................................................................................................................................................................................FDHKPIYYDQRRDELEKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHL.... 75

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.