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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -4.240PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  18  4........................................................................................................................................LLPLEAMEYEINKGAGNPLEFK--GLKSQYLFIFAGVAVLLVVVILYIAGVNCIPFGLLSGSLLVWLTFRLNARYGEHGLMKLLSGKRHPRYLI........................................................................................................................................................................... 100
2 -3.970HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  14  9............................................................................................................MARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLAVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLI............................................................................................................................................................... 147
3 -3.790PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  16  36............................................................................................................TTSNLKDKYKRLVKGTDGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIIQKVGMVRNAFADMGSDLSYSY-ALLDENNNGMIITGIYGRSETV-TYAKPVKDGKSNYSLSVEELQALQRAK............................................................................................................................................................................ 163
4 -3.720PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  15  100.......................................................................................................QEYENQLKDILETIEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIV--VQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRVA............................................................................................................................................................................................. 221
5 -3.450PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  11  2.................................................................................................................................................ATQAIDATIFASSHPDIAKRT------ISGLLISCVMLLIGILSFASTFEL----------------------EDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKHMDKLTDLVNS........................................................................................................................ 110
6 -3.200PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  17  2.......................................................................................................................................................EGHEEVRT--------GWCNFLKGVFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGA-AIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAA................................................................................................................................... 128
7 -3.120PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  20  13..............................................................................................................................................NPEDI-ESQTILKDAA----ATALYGSRGA------GVVLITTKSGRRGKTHIAFTAEYGTSDFATPH............................................................................................................................................................................................... 70
8 -3.060HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  14  10.........................................................................................................FHVLLLICNRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKAQRKELEKR----AEESKKRTHRLCQIGGAVESVLGCPIEEEDLPKLIGFLKRQETNGKFFSKAMQKEL................................................................................................................................................................................ 129
9 -3.020HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  13  1........................................................................................................................................MDMTDNNDDVLVKKSENRIDVPDDGFSRRVM-WTAVCVVIGLLIFFRNKGFSVLVSCF............................................................................................................................................................................................................... 72
10 -2.660HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  31  97................................................................................................................................................................GLCVGIFGCIAALAEILLGIIVISMAIGKALGALY.............................................................................................................................................................................................................. 148

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.