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Query: gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSVLast
1 -6.170HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  22  39..SRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALR.......................................... 74
2 -5.400HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  18  55.PVKKTLSIPGWLNDAAESA-------NFSSVLQKGLK.......................................... 86
3 -3.450PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  17  185LRNERDVTAREAYRRKSAEADIDGLF---RDIIREKVTNDDPR..................................... 225
4 -3.300PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  9  1MNKTVNINLANML------HIDENAYQKLLRYVKRSFAGTAGSDEIIADIEARIAE........................ 54
5 -3.080PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  20  220.............................YEIFAIGVRMREENQ.................................... 234
6 -2.820PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  12  74.....................GDGQVVQLSRLLHLVASSVDGSRD-IETIAHRVSGRFGREVSADNVRYLIEQKLDPLGV 131
7 -2.760HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  12  5.......ILFQKARKVLNNERGEANYFSTVVFIFIAVLLLATKQELDHAADQMVKQIQLSGGVNGETDELFEFLSSQIEG 87
8 -2.420PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  13  90.....GVAFKASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVKKLI.............................. 134
9 -2.410HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  11  95.........EKKIESAIRIVGNENPYHPIRDYLNGL............................................ 121
10 -2.360PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  3  123.KERLQQNFIGYFREAMYKRHKNSSTSILVNWAMDFLKMYAGENLPFFKIDNAFAEEYKR.................... 183
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.