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Query: gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst MMQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITALLast
1 -4.010HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  7  73....................LDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPER....... 110
2 -3.330PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  7  56............KEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVYDEERVYPSDIKKI 111
3 -3.250PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  17  1...RADEFGYLFLDRP----YQVLASSAITYEEMLRLHA----IEGLLKYYGNSHL......... 46
4 -2.500HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  12  8............DDVLVKKFFSENRID-VPDDGFSRR............................ 31
5 -2.110HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  6  6..........CVEGFSVDVFIVHIR........................................ 20
6 -2.100PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  6  205.....KEKDRLVKGVCPIDFWKAMTEKPLPVFPEGRLVDLPLTVADLLAPDLNQK.......... 254
7 -1.980HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  27  7GEERMKEEDNILKKKVPEGYFENLTSEVM.................................... 42
8 -1.830HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  7  16.SSSLTKKNMTMEENTVHPARKLLLGQLI.................................... 43
9 -1.500PB006933 gi|1881301|dbj|BAA19328.1| SIMILAR TO ORF13 OF ENTEROCOCCUS FAECALIS TRANSPOSON TN916. [Bacillus subtilis]  ali follow..  4  70TNKPTNDDKQKISVTAAENFLSGFINEYMVKNDQESIEKRMQSLESYM................. 118
10 -1.450HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  12  87................MEKYGISSEKKIESAIRIVGNENPYHPIRDYLN................ 119
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.