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Query: gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFSLast
1 -6.630sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1  ali   11  1.....QLLQNVARFKGFPQPILSEDGSRIRYGGRDYSLDEFEANALHILRTQGLVPEHVETRTL.................................................................. 73
2 -5.550sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2  ali   13  17FKRFTASIENILDNLETAFGDDDEIPQELLLGKHQLNELGSESAKIKAMGIMDKLSTDKTVKVLNI................................................................ 86
3 -5.140sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2  ali   11  26......IFCLDFIKIQLDEPDHDPVEIILNTSDLTKCEWCNVRKLPVVFLQAIPAVYQKLSIQLQMN----DCKGVNKLTNLEEQYIILIFQNGLDPPANMVFESIINEI.................... 132
4 -4.560sp|Q04206|TF65_HUMAN Transcription factor p65 OS=Homo sapiens GN=RELA PE=1 SV=2  ali   17  6......................SEALLQLQFDDEDLGALLGNSTDPAVFTDLASVDNSEFQQLLNQGI.............................................................. 51
5 -4.460sp|Q969R8|ITFG2_HUMAN Integrin-alpha FG-GAP repeat-containing protein 2 OS=Homo sapiens GN=ITFG2 PE=2 SV=1  ali   13  29.......................................................................GRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPV. 86
6 -4.390sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens GN=RNF213 PE=1 SV=2  ali   5  88....HKKLERLCLTLGIPQATDPDKTYELTTDNMLKILA........................................................................................... 122
7 -4.370tr|E7EVS9|E7EVS9_HUMAN Uncharacterized protein OS=Homo sapiens GN=EFCAB5 PE=4 SV=1  ali   12  19KSVIQNVLQEFFQNPDFKLGSHCK---QLDITDSTEPRLNKMEFTEYISSHIKDLKSEMFEELLKHLCHSADEFREVIKADMRRQMFLHCDHGKVGFLDRQRTLALLELFYDHSSQMLRSLLRNPRQ... 146
8 -4.330sp|A4FU69|EFCB5_HUMAN EF-hand calcium-binding domain-containing protein 5 OS=Homo sapiens GN=EFCAB5 PE=1 SV=2  ali   12  20KSVIQNVLQEFFQNPDFKLGSHCK---QLDITDSTEPRLNKMEFTEYISSHIKDLKSEMFEELLKHLCHSADEFREVIKADMRRQMFLHCDHGKVGFLDRQRTLALLELFYDHSSQMLRSLLRNPRQ... 147
9 -4.280sp|O60733|PA2G6_HUMAN 85 kDa calcium-independent phospholipase A2 OS=Homo sapiens GN=PLA2G6 PE=1 SV=2  ali   18  1MQFFGRLVNTFSGVTNLFS--NPFRVKEVAVADYTSSDRVREEGQLILF---QNTPNRTWDCVLV................................................................. 60
10 -4.030tr|B7Z6K3|B7Z6K3_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLA2G6 PE=2 SV=1  ali   18  1MQFFGRLVNTFSGVTNLF--SNPFRVKEVAVADYTSSDRVREEGQLILF---QNTPNRTWDCVLV................................................................. 60
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205