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Query: gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFELast
1 -8.090sp|Q6PIJ6|FBX38_HUMAN F-box only protein 38 OS=Homo sapiens GN=FBXO38 PE=1 SV=3  ali   1..............................................................................EDDHVQVLVLKSKNLVGVTMTNCGITDL-KDCPKMMFIHA--TRCRVLKHLKPIVNRFDYAQNMDQVLDQILRMPPERNRIIYLRPMQQVDLTLEQKLFSGPYPYHICIIHEFSNPPNVRNKVRIRSWMDTIANINQEFPEATRSEEDLKKYPKYPWGREIYTLEAPYSMISDFPRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQLSADICMETIGEEISEMRQMKKGV-------QRVVAIFIHYCDVNGEP............................................................................ 270
2 -4.060sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3  ali   12  12...............................................................................................................................................KAMPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVARLFSDARRLLLYSQKDTSMKDMRKVLRTLQQIKKSSSNLKLQDFLVDNETFSGFLYHNLSLP--KSTVDKMLRADVILHKV--FLQGYQLHLTSLCNGSKSEEMIQLGDQEV------SELCGLPEKLAAAERVLRSNMDILKPILRTLNSTSPFPSKELAEATKTLLHSLGTLAQELFSMRSWSDMRQEVMFLTNVNSSSSSTQIYQAVSRI........ 260
3 -3.630sp|Q9NVH2|INT7_HUMAN Integrator complex subunit 7 OS=Homo sapiens GN=INTS7 PE=1 SV=1  ali   11  10.........LNSLKEFSHAEQCLTGLENYSSALSCIAESLKFYHKGIASLTAASTPLNPLSF---------QCEFVKLRIDLLQAFSQLICTCNSLKTSPPPAIATTIAMTLGNDLQRCGRISNQMKQSMEEFRSLASRYGDLYQ----------ASFDADSATLRNVELQQQSCLLISHAIEALILDPESASFQEYGSTGTAHADSEYERRMMSVYNHVLEEVESLNRKYTPVSYMHTACLCNAIIALLKVPLSFQRFQKLQSTSIKLALSPSPRNPAEPIAVQNNQQLAL-----KVEGV-----QHGSKPGLFRKIQSVCL..................................................................................... 300
4 -3.330sp|Q3KNT9|TMM95_HUMAN Transmembrane protein 95 OS=Homo sapiens GN=TMEM95 PE=2 SV=1  ali   11  10.....................................................................................................................................................................................................................................................................................................DLSGRLARLCSQMEARQKECGASPDFSAFALDEVSMNKVTEKTHRVLRVMEIKEAVSSLPSYWSWLRKTKLPEYTREALPACRGSTTLYNCST....................... 104
5 -3.140sp|P48764|SL9A3_HUMAN Sodium/hydrogen exchanger 3 OS=Homo sapiens GN=SLC9A3 PE=1 SV=2  ali   24  31.............................................................................LDRSLLARLPPWLSPGETVVPSQRARTQIPYSPGTFCRLMPFRLSSKSV........................................................................................................................................................................................................................................................................................... 79
6 -3.130sp|Q96KP1|EXOC2_HUMAN Exocyst complex component 2 OS=Homo sapiens GN=EXOC2 PE=1 SV=1  ali   20  48......................................................................................................IQTVRLTHESLTALEIPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKRLAEKEDWIVDNEGLTSLPCQFEQCIVCSLQ.................................................................................................................................................................................................................................... 126
7 -2.960sp|Q9HCF4|ALO17_HUMAN Protein ALO17 OS=Homo sapiens GN=KIAA1618 PE=1 SV=2  ali   14  21........................................................................HQDLKSGEVTLAEIDVIFKDFV------NKYTDLDSELKIMCTVDHQGQR-DWIKDRVEQIKEYHHLHQAVHAAKVILQVKESLGLNGDFSVLNTLLNFTDNFD--DFRRETLDQINQELIQAKKLLQDISEARCKGLQALSLRKEFICWVREALGGINELKVFVDLASISAGENRVACFHDAVQGYASLLFKLDPSVDFSAFMKHLKKL----KALDKDQYLPRKLVSLILSLMQILLNRALLSNVRAVTVE.................................................................................... 266
8 -2.950sp|Q86VH2|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1  ali   20  1......................................................................................................................................................................................SQIQVVGNVGRLHGVTPVKLCRKELRQISALELSLRRSSLGVGIGSMAAD................................................................................................................................................................................. 50
9 -2.940sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens GN=DYNC2H1 PE=1 SV=4  ali   13  1.......................................................................................................KELEGYIQKLQ---------NAAERLATENRKLRKWHTTFEKVVVLMNIDLLRQQQRWKDGLQELRTGLATVEAQGFQASDMHAWKQHWNHQLYKALEHQQMGLEALNENLPEINDLTYKQGRLQFRPPFEEIRAKYYREM--KRFIGIPNQFKGVGEAGDESIFSIMIDRNASGFLTI------FSKAEDLFRRLSAVLHQHKEWIVI-----QVDMEALVEKHLFTVHDWEKNFKALKIKGKEVERLPSA-VKVDCLNINCNPVKT...................................... 249
10 -2.900sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferase ASH1L OS=Homo sapiens GN=ASH1L PE=1 SV=2  ali   22  1..........................................................................................................................................................................................................................................................................................................................................................DFIAELEELISRLSEIRITHRSHHFIPDLLPTIFRINFNS....................... 41

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.