current user: public

If you have questions about the server, please let us know.

Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400
# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -5.030tr|B4DKJ6|B4DKJ6_HUMAN Uncharacterized protein OS=Homo sapiens GN=CHMP7 PE=2 SV=1  ali   11  1....................................................................................................................MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRKRLR........................................................................................................................................................................................ 104
2 -4.840sp|O75140|DEPD5_HUMAN DEP domain-containing protein 5 OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   1.........................................................................................................YWLSMGRTFHKVTLKDKMITVTRYLPKYPYESAQIHYTYSLCPSHSDSEFVSCWVEFSHE-YKW-NYLDQYICSAFSLIESLKFWRTRFLLLPACVTATKRITEGEAHCDIYGDRPRADED............................................................................................................................................................................... 127
3 -4.810sp|Q8IYM2|SLN12_HUMAN Schlafen family member 12 OS=Homo sapiens GN=SLFN12 PE=1 SV=2  ali   10  1................................................................................................................LEWQRQRHHCPGLSGRITYTPENLCRKLFLQHEGLKQLICEEMDSVRKGSLIFSRSWSVDLGKVLCDALLISQDSPPV-----LYTFHMVQDEEFKGYSTQTALTLKQKLAKIGGYTKKVCVMTKIFYL................................................................................................................................................................ 129
4 -4.400sp|Q9C093|SPEF2_HUMAN Sperm flagellar protein 2 OS=Homo sapiens GN=SPEF2 PE=1 SV=2  ali   10  6..................................................EMPLFLVPYWELIENSYINTIKTVLRHLREDQHTVLAYLYEIRTSFQEFLKRPDHKQDFVAQWQADFNSLPDDLW-EETKAELHQRVNDLRDRLWDICDARKEEAEQERLDIINE--SWLQDTLGMTMNHFF----------SLMQAELNRFQDTKRLLQDYYWGMES....................................................................................................................................................................................... 162
5 -4.230sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2  ali   12  98..........................................................................................................NVDAAELVETIAATAREIELENMTEVVRKGIQEAQVELQK--ASEERLLELRQIPVVGSVLNWFSPVQALQKGTFNLTAG....................................................................................................................................................................................................................... 184
6 -4.170sp|Q5TEZ5|CF163_HUMAN Uncharacterized protein C6orf163 OS=Homo sapiens GN=C6orf163 PE=1 SV=2  ali   18  3................................................................................................................................................................................................................................................................................................................................................KLANTQGELLSIAKQLGIMTNWKDFLEEELQETRMAFQKYINYTFPKLS................ 51
7 -4.090tr|E9PIT2|E9PIT2_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC22A10 PE=4 SV=1  ali   15  18......................................................................................................................DALLRISIPLDSNLRPEKCRRFVHPQWQLLHLNGTIHSTSEADTEPCVDGWVSYFPSTIV---LVCD-TGMLVGGIIGGHVS......................................................................................................................................................................................................... 115
8 -4.040sp|Q8WXF8|DEDD2_HUMAN DNA-binding death effector domain-containing protein 2 OS=Homo sapiens GN=DEDD2 PE=1 SV=1  ali   6..................................................................................................................................DIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLRSRDLGSVVCDIKFSELSY---LDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSV..................................................................................................................................................................... 108
9 -4.030sp|O75949|F155B_HUMAN Transmembrane protein FAM155B OS=Homo sapiens GN=FAM155B PE=2 SV=2  ali   18  29.............................................................................................................................................PSDKPCADSERAQR-------------WRLSLASLLFFTVLLADHLWLCAG................................................................................................................................................................................................................. 66
10 -4.020tr|E7ENG5|E7ENG5_HUMAN Uncharacterized protein OS=Homo sapiens GN=G6PC PE=4 SV=1  ali   3....................................................................................................................................................................RPYWWVTSVPLIKQFPVTCETGPGKDKADLQISVLECHFVVGILGCAAECLSVTNLPCCSFSSSSCCWSPVRHCCCR................................................................................................................................................................ 87

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.