current user: public
If you have questions about the server, please let us know.

Query: gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340
# Score Template Links and tools%idFirst MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVALast
1 -24.5004fcy_A mol:protein length:529 Transposase  ali model follow..  9  34..WLPAVQAADEMLNQGISTKTVAGHYQVSASTLRDKYYQVQKFAKSRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKERLELAAREHGWS-SRATAFRRIQQLDEQRTVEHLDAMQWINGDGYLHNV-WFNGDVIRPKTWFWQDVKTRKILWRCDVSENIDSIRLSFMDVVTRYGPEDFHITIDNTRGAANKWLTGGAPNRY-EDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDGDRAVDAELFLKTLAEGVAMFNARTGRETEMCGGKLSFDDVFEREQKRMLLLPAEAVNVSRLKVGGSLKGAKNVYYNLMLAGVKKVVVR. 458
2 -20.3004fw2_A mol:protein length:270 Integrase  ali model follow..  11  1..PLREAKDLHTALHIG--PRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRG-----------------------------------------------------------LGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI--RVLAEGDGFMKRIPTSKQGELLAKAMYAL-NHKERGENTKTPIQKHWRPTVLTE---EKGWNVLVWGRGYAAVKNRDTDKVPSRKVKPDIT... 270
3 -20.3004fw1_A mol:protein length:222 Integrase  ali model follow..  12  9.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVL-GRPKAIKTDN-------------GDAFTSKSTREWLARWGIAHTTGIPGNSQGQAMVCRANRLLKDKI--RVLAEGDGFMKRIPTSKQGELLAKAMYAL-NHKERGENTKTPIQKHWRPT............................................ 168
4 -20.2001c0m_A mol:protein length:238 PROTEIN (INTEGRASE)  ali model follow..  13  9.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRI--RVLAEGDGFMKRIPTSKQGELLAKAMYAL-NHKERGENTKTPIQKHWRPT............................................ 168
5 -19.9005cz1_A mol:protein length:169 integrase  ali model follow..  16  9.......................................................................................................................PRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYM-GIPQKIKTDN-------------APAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQL--------NKLQKAGKYYTPHHLLAHALFVL-NHVNMDNQGHTAAERHWGPI............................................ 162
6 -19.8005ejk_A mol:protein length:270 Gag-Pro-Pol polyprotein  ali model follow..  11  1..PLREAKDLHTALHIG--PRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRG-----------------------------------------------------------LGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVM-GRPKAIKTDN-------------GSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKI--RVLAEGDGFMKRIPTSKQGEMMAKAMYAL-NHFERGENTKTPIQKHWRPTVLTE---EKGWNVLVWGRGYAAVKNRDTDKVPSRKVKPDIT... 270
7 -19.5003o4n_A mol:protein length:150 integrase  ali model follow..  14  8.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIMKRIPASKQGELLAKAMYALN........................................................................... 148
8 -19.4001vsd_A mol:protein length:152 INTEGRASE  ali model follow..  14  8.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIMKRIPTSKQGELLAKAMYALN........................................................................... 148
9 -19.3005m0q_A mol:protein length:281 integrase  ali model follow..  13  1...........................................................WIENIPLAEEEHNKWHQDAVSLHLE-----FGIPRTAAEDIVQQ-QENKMPSTLRGSNKRGIDHWQVDYTHYEDK----IILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFA--PKSLQSDN-------------GPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTL----------EKLIPMFNAFESALAGTLITL-NIKRKGGLGTSPMDIFIFNKEQQR-SKSKQEKIRFCYYRTRKRGHPGEWQGPTQVL........ 244
10 -19.1003jca_A mol:protein length:265 Integrase  ali model follow..  12  3.....................................................................ESAQESHALHHQNAAALRFQFHITREQAREIVKLCPGHAPQLGVNPRGLKPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYM-GIPQKIKTDN-------------APAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQ----LNKLQKAGKYYTPHHLLAHALFVL-----NHVNMDNQGHTAAERHWGPI............................................ 211
11 -18.8001asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  17  10.......................................................................................................................PLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI................................................................................................ 120
12 -18.6001cz9_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  16  10.......................................................................................................................PLQIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL-GRPKAIKTDN-------------GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKI................................................................................................ 120
13 -18.1001c6v_A mol:protein length:164 PROTEIN (SIV INTEGRASE)  ali model follow..  17  8.......................................................................................................................DLGTWQMDCTHLEGK----IVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWP--ITHLHTDN-------------GANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQI----------DRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERL................................................ 151
14 -18.1004pa1_A mol:protein length:151 Integrase  ali model follow..  12  6............................................................................................................................QMDCTHFDGK----IILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAH-NVTE-LQTDN-------------GPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWI----------QKFLPETTSLDNALSLAVHSLNFKRRGRIGGMAPYELLAQQES........................................... 149
15 -18.0005hot_A mol:protein length:291 Integrase  ali model follow..  13  1...........................................................HLDGIDKAQEEHEKAHSNWRAM-----ASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDSPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 200
16 -17.4004mq3_A mol:protein length:132 Integrase  ali model follow..  14  2......................................................................................................................SHMGIWQMDCTHFDGK----IILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAH-NVTE-LQTDN-------------GPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWI................................................................................................ 108
17 -16.8002lvs_A mol:protein length:105 Putative uncharacterized protein  ali model follow..  15  1MSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVYEIARQL-------PESTIYYALKK............................................................................................................................................................................................................................................. 99
18 -16.3001ex4_A mol:protein length:239 INTEGRASE  ali model follow..  15  13............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
19 -16.0003f9k_A mol:protein length:210 Integrase  ali model follow..  16  2...............................................................VLEKIEPAQEEHEKYHSNVKELSHK-FGIPNLVARQIVNSCAQCQQKGEAIHGQVNELGTWQMDCTHLEGK----IIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWP--ITHLHTDN-------------GANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQI----------SRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPSERL................................................ 201
20 -15.9001u78_A mol:protein length:141 transposable element tc3 transposase  ali model follow..  9  7.LSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASN------SCKTARDIRNELQLSASKRTILNVIKR............................................................................................................................................................................................................................................. 102
21 -15.9001k6y_A mol:protein length:212 Integrase  ali model follow..  13  1...........................................................FLDGIDKAQEEHEKYHSNWRAM-----ASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 200
22 -15.7003av9_A mol:protein length:183 Integrase  ali model follow..  14  22.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 165
23 -15.7004nyf_A mol:protein length:168 Integrase  ali model follow..  15  20............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTSATVKAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 158
24 -15.7004y1c_A mol:protein length:167 Integrase  ali model follow..  15  17............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 155
25 -15.6004lh4_A mol:protein length:182 Integrase  ali model follow..  15  26............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 164
26 -15.5001b92_A mol:protein length:163 PROTEIN (INTEGRASE)  ali model follow..  13  8.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQAVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
27 -15.5005oi3_A mol:protein length:182 Integrase  ali model follow..  15  26............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 164
28 -15.4001biz_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  15  16............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 154
29 -15.3004ojr_A mol:protein length:164 HIV-1 Integrase  ali model follow..  15  14............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 152
30 -15.3005eu7_A mol:protein length:153 Integrase  ali model follow..  15  6............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTSTTVKAACDWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 144
31 -15.3001bis_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  15  16............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACEWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 154
32 -15.3003zcm_A mol:protein length:167 HIV INTEGRASE  ali model follow..  15  11............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 149
33 -15.2001biu_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  14  11.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACEWGGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 154
34 -15.1005hrr_A mol:protein length:164 Integrase  ali model follow..  15  14............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTIHTDN-------------GSNFTSNSVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 152
35 -15.1004tsx_A mol:protein length:163 Integrase  ali model follow..  15  8.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAETLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
36 -15.1005u1c_A mol:protein length:383 HIV-1 Integrase, Sso7d chimera  ali model follow..  10  95.....................................................................DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIQSMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRV-DSRDPVWKGPAKLL........ 331
37 -15.1004e1m_A mol:protein length:166 HIV-1 Integrase  ali model follow..  15  16............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 154
38 -14.9003ao2_A mol:protein length:163 POL polyprotein  ali model follow..  15  13............................................................................................................................QLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERI................................................ 151
39 -14.8004gvm_A mol:protein length:163 Gag-Pol polyprotein  ali model follow..  14  8.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSTTVKTACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
40 -14.8005jl4_A mol:protein length:163 Integrase  ali model follow..  15  8.......................................................................................................................SPGIWQLDCTHLEGK----VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGR--WPVKTVHTDN-------------GSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKII----------GQIRDQAEHLKIAVQMAVFIHNKKRKGGIGGYSAGERI................................................ 151
41 -14.4001hcr_A mol:protein length:52 PROTEIN (HIN RECOMBINASE)  ali model follow..  25  5AINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIK........................................................................................................................................................................................................................................................................................................ 48
42 -14.2003kkr_A mol:protein length:152 Integrase  ali model follow..  18  16..........................................................................................................................................IIWVAVETNSGLVEAQVIPEETALQVALCILQLIQRYT--VLHLHSDN-------------GPCFTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRL----------AAYQGDCETVEAALSLALVSL-NKKRGGIGGHTPYEIYLESEH........................................... 148
43 -13.4003dlr_A mol:protein length:202 Integrase  ali model follow..  18  15......................................................................................................................KPFDKFFIDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI--AIPKVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVER----------------------------KNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQL............................... 163
44 -13.3002x6n_A mol:protein length:200 INTEGRASE  ali model follow..  18  11......................................................................................................................KPFDKFFMDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI--AIPRVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVER----------------------------KNSDMKRLLTKLLVGRPTKWYDLLPVVQLAMNNTYSPVLKYTPHQL............................... 159
45 -12.9002elh_A mol:protein length:87 CG11849-PA  ali model follow..  16  22SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDK......................................................................................................................................................................................................................................................................................................... 64
46 -11.8002m8e_A mol:protein length:57 SLEEPING BEAUTY TRANSPOSASE  ali model follow..  22  9.ISQDLRKKIVDLHKSGSSLGAISKRLKVPRSSVQTIVRKYKHHGTTQHH.................................................................................................................................................................................................................................................................................................. 57
47 -11.0001je8_A mol:protein length:82 Nitrate/Nitrite Response Regulator Protein NARL  ali model follow..  36  21.......RDILKLIAQGLPNKMIARRLDITESTVKVHVKH............................................................................................................................................................................................................................................................................................................ 53
48 -11.0003l2q_A mol:protein length:395 Integrase  ali model follow..  12  3.......GCNTKKPNLDAELDQLLQGHYIKYPKQYTYFLEDGKVKVSRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATL--LKIANLYWPNMRKDVVKQLGRCQQCLITNASNKRPQKPFDKFFIDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI--AIPKVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQL----------ALNNTYSPVLKYTPHQLL................................................ 272
49 -10.8001fse_A mol:protein length:74 GERE  ali model follow..  33  17.......REVFELLVQDKTTKEIASELFISEKTVRNHISN............................................................................................................................................................................................................................................................................................................ 49
50 -10.8003vwb_A mol:protein length:143 Virulence regulon transcriptional activator virB  ali model follow..  21  22...RELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNNDYKILFNYYKGLEKANESLSSTLPILKEE............................................................................................................................................................................................................................................................ 107
51 -10.5004bac_A mol:protein length:396 INTEGRASE  ali model follow..  12  5........CNTKKPNLDAELDQLLQGHYIKYPKQYTYFLEDGKVKVSRPEGVKIIPPQSDRQKIVLQAHNLAHTGREATL--LKIANLYWPNMRKDVVKQLGRCQQCLITNASNKRPQKPFDKFFIDYGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI--AIPKVIHSDQ-------------GAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQL----------ALNNTYSPVLKYTPHQLL................................................ 273
52 -10.4001zx4_A mol:protein length:192 Plasmid Partition par B protein  ali model follow..  21  8HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTSDYKTLCAVGDEMGNKNLEFDQLIQNISPE............................................................................................................................................................................................................................................................ 96
53 -10.4003ulq_B mol:protein length:90 Transcriptional regulatory protein ComA  ali model follow..  21  29.......CLILQEVEKGFTNQEIADALHLSKRSIEYSLTS............................................................................................................................................................................................................................................................................................................ 61
54 -10.3002rnj_A mol:protein length:91 Response regulator protein vraR  ali model follow..  36  29.......MEILLLIAKGYSNQEIASASHITIKTVKTHVSN............................................................................................................................................................................................................................................................................................................ 61
55 -10.2001zlk_A mol:protein length:95 Dormancy Survival Regulator  ali model follow..  22  24....DQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSR............................................................................................................................................................................................................................................................................................................ 59
56 -10.2004wt0_B mol:protein length:68 Response regulator receiver domain protein  ali model follow..  42  12.......HEILMLIAQGKSNQEIADELFITLKTVKTHVSN............................................................................................................................................................................................................................................................................................................ 44
57 -10.2004wsz_A mol:protein length:68 Response regulator receiver domain protein  ali model follow..  42  12.......HEILMLIAQGKSNQEIADELFITLKTVKTHVSN............................................................................................................................................................................................................................................................................................................ 44
58 -10.1001oyi_A mol:protein length:82 double-stranded RNA-binding protein  ali model follow..  12  15.NAEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPR............................................................................................................................................................................................................................................................................................ 69
59 -10.0001hlv_A mol:protein length:131 MAJOR CENTROMERE AUTOANTIGEN B  ali model follow..  20  7QLTFREKSRIIQEVEENLRKGEIARRFNIPPSTLSTILKNKRAVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPALRIAEELGMDDFTASNGWLDRFRRRRS........................................................................................................................................................................................................................................... 131
60 -10.0002x48_A mol:protein length:55 CAG38821  ali model follow..  37  19....DLVSVAHELAKMGYTVQQIANALGVSERKVRRYLE............................................................................................................................................................................................................................................................................................................. 53
61 -9.7801umq_A mol:protein length:81 PHOTOSYNTHETIC APPARATUS REGULATORY PROTEIN  ali model follow..  20  32ADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK............................................................................................................................................................................................................................................................................................................ 71
62 -9.7001s7o_A mol:protein length:113 Hypothetical UPF0122 protein SPy1201/SpyM3_0842/SPs1042/spyM18_1152  ali model follow..  16  22LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTE------------KILETYEMKL-HMYSDYVVRSEIFDDMIAHYPHDEYLQEKISILTSIDNRE........................................................................................................................................................................................................................................... 113
63 -9.5502l49_A mol:protein length:99 C protein  ali model follow..  20  1.MSNTISEKIVLMRKSYLSRQQLADLTGVPYGTLSYYESGRSTP........................................................................................................................................................................................................................................................................................................ 44
64 -9.5004wcg_A mol:protein length:98 ORF112  ali model follow..  25  37PISEEMNLKILAYLGTGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHP.............................................................................................................................................................................................................................................................................................. 92
65 -9.3704hob_A mol:protein length:69 Putative uncharacterized protein  ali model follow..  25  8PISEEMNLKILAYLGTGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHP.............................................................................................................................................................................................................................................................................................. 63
66 -9.2802mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  18  10.......AGLRTLVENETTFKQIALESGLSTGTISSFINDKYNGDNERVSQTLQRWLEKYHA...................................................................................................................................................................................................................................................................................... 65
67 -9.2501xsv_A mol:protein length:113 Hypothetical UPF0122 protein SAV1236  ali model follow..  12  25LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKQKFEQRREIYDEMKQHLSNPEQIQRYIQQLED................................................................................................................................................................................................................................................................. 111
68 -9.1501p4w_A mol:protein length:99 rcsB  ali model follow..  26  34.......SEVLRLFAEGFLVTEIAKKLNRSIKTISSQ............................................................................................................................................................................................................................................................................................................... 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.