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Query: gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFSLast
1 -56.7001n5b_A mol:protein length:132 YOPE regulator  ali model follow..  98  1MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNNEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNNLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS 130
2 -56.2001k6z_A mol:protein length:141 Type III secretion chaperone SycE  ali model follow..  100  6MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS 135
3 -51.6001l2w_A mol:protein length:123 YopE regulator  ali model follow..  99  2GYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSS......... 122
4 -47.7004jmf_B mol:protein length:116 Probable chaperone  ali model follow..  43  3.PLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFTRLEGQG---DATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR............ 116
5 -43.9003epu_A mol:protein length:144 STM2138 Virulence Chaperone  ali model follow..  13  2YSRADRLLRQFSLKLNTDIVFDENRLCSFIIDNYRILLTSTNSEYIMIYGFCGKPPNNLAFEFLNANLWFAENNGPHLCYDNNSQSLLLALNFSLNESSVEKLECEIEVVIRSMENLYHILQDKGITLDT 135
6 -43.1005wez_A mol:protein length:139 Tir chaperone  ali model follow..  12  3SSRSELLLDRFAEKIGVGISFNENRLCSFAIDEYYISLSDANDEYMMIYGVCGKFPTNFALEILNANLWFAENGGPYLCYESGAQSLLLALRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLEN 137
7 -43.0001k3e_A mol:protein length:156 CesT  ali model follow..  12  2SSRSELLLEKFAEKIGIGISFNENRLCSFAIDEYYISLSDANDEYMMIYGVCGKFPTNFALEILNANLWFAENGGPYLCYEAGAQSLLLALRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLEN 136
8 -42.7004gf3_A mol:protein length:141 Putative yopH targeting protein  ali model follow..  16  1MRTYSSLLEEFATELGLEIETNELGHGAVTIDKWVVHLAPINEKELVAFMRAGILTQSQLYDILRKNLFSPLSGVIRCALDKD-DHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDH 132
9 -41.9005z38_A mol:protein length:158 CesT protein  ali model follow..  12  4SSRSELLLDRFAEKIGVGISFNENRLCSFAIDEYYISLSDANDEYMMIYGVCGKFPTNFALEILNANLWFAENGGPYLCYESGAQSLLLALRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLEN 138
10 -41.7004g6t_A mol:protein length:128 Type III chaperone protein ShcA  ali model follow..  11  7.LFYKTLLDDFSRSLEMQLVFDDHGTCNMIIDNTFALTLSCDYERLLLIGLLEPHKDIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWREA.......... 128
11 -41.5001jyo_A mol:protein length:130 SicP  ali model follow..  11  1LQAHQDIIANIGEKLGLPLTFDDNNQCLLLLDSDIFTSIEAKDDIWLLNGMIIPLSDSIWRQIMVINGELAANNEGTLAYIDAAETLLL-IHAITDLTNTYHIISQLESFVNQQEALKNILQEYAK.... 129
12 -40.4002bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT  ali model follow..  18  3.TTFTELMQQLFLKLGLNHQVNENDVYTFEVDGIQVLIACYHQQWVQLFSELGA------DLPTNDNLFGEHWPAHVQGRL--DGKPILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNST 124
13 -39.6001s28_A mol:protein length:132 ORF1  ali model follow..  17  5.NSFDRLIDGLAKDYGMPEKKHEHEVYCFEFKEVSIRIYQDKFKWVYFLSDIGVIDSNACQSLLRLNEFNLRTPFFTVGLNEK-KDGVVHTRIPLLNLDNVEMRRVFEALLNLSGEVKKTFGF....... 131
14 -39.4002bsj_A mol:protein length:133 CHAPERONE PROTEIN SYCT  ali model follow..  18  5QTTFTELMQQLFLKLGLNHQVNENDVYTFEVDGIQVLIACYHQQWVQLFSELGADL------PTNDNLFGEHWPAHVQGRL--DGKSILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNST 127
15 -38.0001xkp_C mol:protein length:143 Chaperone protein yscB  ali model follow..  14  1...MQNLLKNLAASLGRKFVADKQGVYRLTIDKHLVMLAP-HGSELVLRTPIDAPNVTLLRSLMQQALAWAKRYPQTLVLDDC-GQLVLEARLRLQELDTHGLQEVINKQLALLEHLIPQLTPFSVASRV 134
16 -35.5003kxy_A mol:protein length:133 Exoenzyme S synthesis protein C  ali model follow..  13  4TSKVNRLLAEFAGRIGLPLSLDEEGMASLLFDEQVGVTLLAERERLLLEADVVGIDEGIFRQLASFNRHW-HRFDLHFGFDELTGKVQLYAQILAAQLTLECFEATLANLLDHAEFWQRLLPCAS..... 133
17 -24.9001xkp_B mol:protein length:124 Chaperone protein sycN  ali model follow..  15  1MSWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWLA-WHRCEDAMVKALTLTAAQKSGALPLRAGWLGESQLVLFVSLDERSLTLPLLHQAFEQLLRLQQEVLA........... 122
18 -22.1002plg_A mol:protein length:163 Tll0839 protein  ali model follow..  8  25VEIIETVISSLHQGDAPLGQTDSGKIWMFRYGSAEVFVQHTEEDFLTIWSPVLPLPLALYRKLLTLNW--LTTFEAHFAIA--EEQVQVVASRTLGGITAGEISRLITIVATLADDYDDALRAE...... 152
19 -17.3001k3s_A mol:protein length:113 SigE  ali model follow..  15  1...MESLLNRLYDALGLDAPEDEP---LLIIDDGIQVYFNESDHTLEMCCPFMPLPDDILQHFLRLNY----TSAVTIGADADNTALVALYRLPQTS-TEEEALTGFELFISNVKQLKEHYA........ 113
20 -14.0003tu3_A mol:protein length:161 ExoU chaperone  ali model follow..  18  15..QSNAMIDTWLAQWGLRLPSSNDATLRLQPAEGPELVMERLEGGWLFVVELGLVPSGLPLQLLQVNSPFSSLAPVKLAAD-DAGRLVLWAEARDGVDDVDALNRLHDRLREGHSRLVPLLEPTGELVPA 145
21 -11.5002fm8_A mol:protein length:135 Surface presentation of antigens protein spaK  ali model follow..  10  5..DIAELVRSALEVSGCD-GIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGADSMVVLQQLMTIMEGCHFARGGQLLLGEQNGELTLKALVHPDFLDGEKFSTALNGFYNYLEVFSRSLMR....... 135
22 -11.0001ry9_A mol:protein length:145 Surface presentation of antigens protein spaK  ali model follow..  8  11..NLVQLVRDSLFTIGCP-DLDSHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSLNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVDGIVFAEILHEFYQRMEILNGVL......... 139
23 -9.4502xga_A mol:protein length:153 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAK  ali model follow..  8  19..NLVQLVRDSLFTIGCP-DLDSHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSLNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVDGIVFAEILHEFYQRMEILNGVL......... 147
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205